[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************
ID : mmu-mir-542
DESCRIPTION : mmu-mir-542 MI0003522 Mus musculus miR-542 stem-loop
CHROMOSOME : X
SPAN : 50402580 - 50402664
LENGTH : 85
SEQUENCE : GGATCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGTGCCCTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCC
OVERHANG THRESHOLD : 75%
**********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-542-3p
ACCID : MI0003522
PARENT : mmu-mir-542
CHROMOSOME : X
START : 50402580
STOP : 50402664
OFFSET : 52..73
SEQUENCE : TGTGACAGATTGATAACTGAAA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-542-5p
ACCID : MI0003522
PARENT : mmu-mir-542
CHROMOSOME : X
START : 50402580
STOP : 50402664
OFFSET : 14..35
SEQUENCE : CTCGGGGATCATCATGTCACGA
STRAND : -
******************************
*** MATURE-3P ***
_____________________________________________________________________________________
GGATCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGTGCCCTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCC REF X 50402580 - 50402664
TGTGACAGATTGATAACTGAAA MATURE-3P X 50402632 - 50402737 mmu-miR-542-3p -
CTCGGGGATCATCATGTCACGA MATURE-5P X 50402594 - 50402699 mmu-miR-542-5p -
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................................................GTGACAGATTGATAACTGA............... read_198356_7_3_3_0_0_3 MATURE-3P 16 31.37 13 34.21 3 23.08 19
....................................................GTGACAGATTGATAACTGAAAGt........... read_278923_2_2_2_1_0_2 MATURE-3P 9 17.65 6 15.79 3 23.08 t 22
....................................................GTGACAGATTGATAACTGAAAG............ read_78923_0_5_0_0_2_0 MATURE-3P 7 13.73 5 13.16 2 15.38 22
....................................................GTGACAGATTGATAACTGAAA............. read_243577_1_1_1_0_1_1 MATURE-3P 5 9.80 3 7.89 2 15.38 21
....................................................GTGACAGATTGATAACTGAA.............. read_44397_2_1_0_1_0_0 MATURE-3P 4 7.84 3 7.89 1 7.69 20
....................................................GTGACAGATTGATAACTGAg.............. read_152458_1_1_0_0_0_0 MATURE-3P 2 3.92 2 5.26 0 0.00 g 19
......................................................GACAGATTGATAACTGAAAGt........... read_191808_0_2_0_0_0_0 MATURE-3P 2 3.92 2 5.26 0 0.00 t 20
....................................................GTGACAGATTGATAACTGAAAGtt.......... read_268396_0_1_0_0_0_0 MATURE-3P 1 1.96 1 2.63 0 0.00 tt 22
......................................................GACAGATTGATAACTGAAAGta.......... read_25761_1_0_0_0_0_0 MATURE-3P 1 1.96 1 2.63 0 0.00 ta 20
....................................................GTGACAGATTGATAACTGAAAGa........... read_340186_0_0_0_0_0_1 MATURE-3P 1 1.96 0 0.00 1 7.69 a 22
....................................................GTGACAGATTGATAgCTGAA.............. read_211591_1_0_0_0_0_0 MATURE-3P 1 1.96 1 2.63 0 0.00 14G5
....................................................GTGACAGATTGATAtCTGAAA............. read_312689_1_0_0_0_0_0 MATURE-3P 1 1.96 1 2.63 0 0.00 14T6
....................................................GTGACAGATTGATAACTGAAAa............ read_201032_0_0_0_1_0_0 MATURE-3P 1 1.96 0 0.00 1 7.69 a 21
---------- ---------- ----------
51 38 13
(74.51) (25.49)
*** MATURE-5P ***
_____________________________________________________________________________________
GGATCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGTGCCCTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCC REF X 50402580 - 50402664
TGTGACAGATTGATAACTGAAA MATURE-3P X 50402632 - 50402737 mmu-miR-542-3p -
CTCGGGGATCATCATGTCACGA MATURE-5P X 50402594 - 50402699 mmu-miR-542-5p -
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............TCGGGGATCATCATGTCACGA................................................... read_138948_4_0_0_2_0_0 MATURE-5P 6 46.15 4 80.00 2 25.00 21
..............TCGGGGATCATCATGTCACG.................................................... read_183943_1_0_0_1_1_1 MATURE-5P 4 30.77 1 20.00 3 37.50 20
..............TCGGGGATCATCATGTCACGAGt................................................. read_381950_0_0_0_0_0_1 MATURE-5P 1 7.69 0 0.00 1 12.50 t 22
..............TCGGGGATCATCATGTCAC..................................................... read_159509_0_0_0_1_0_0 MATURE-5P 1 7.69 0 0.00 1 12.50 19
..............TCGGGGATCATCATGTCA...................................................... read_322438_0_0_0_0_1_0 MATURE-5P 1 7.69 0 0.00 1 12.50 18
---------- ---------- ----------
13 5 8
(38.46) (61.54)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 38 13 51 79.69%
MATURE-5P 5 8 13 20.31%
---------- ---------- ----------
43 21 64
[END]