[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************
ID : mmu-mir-541
DESCRIPTION : mmu-mir-541 MI0003521 Mus musculus miR-541 stem-loop
CHROMOSOME : 12
SPAN : 110980619 - 110980708
LENGTH : 90
SEQUENCE : GCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGC
OVERHANG THRESHOLD : 75%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-541
ACCID : MI0003521
PARENT : mmu-mir-541
CHROMOSOME : 12
START : 110980619
STOP : 110980708
OFFSET : 14..38
SEQUENCE : AAGGGATTCTGATGTTGGTCACACT
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________________
GCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGC REF 12 110980619 - 110980708
AAGGGATTCTGATGTTGGTCACACT MATURE 12 110980633 - 110980746 mmu-miR-541 +
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............AGGGATTCTGATGTTGGTCA......................................................... read_390003_0_1_0_0_0_1 MATURE 2 40.00 1 25.00 1 100.00 20
..............AGGGATTCTGATGTTGGTCAa........................................................ read_171269_0_1_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 a 20
..............AGGGATTCTGATGTTGGTaa......................................................... read_181985_1_0_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 aa 18
..............AGGGATTCTGATGTTGGTCAC........................................................ read_279808_0_1_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 21
---------- ---------- ----------
5 4 1
(80.00) (20.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 4 1 5 100.00%
---------- ---------- ----------
4 1 5
[END]