[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-505
DESCRIPTION : mmu-mir-505 MI0004706 Mus musculus miR-505 stem-loop
CHROMOSOME : X
SPAN : 57647578 - 57647667
LENGTH : 90
SEQUENCE : AAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA
OVERHANG THRESHOLD : 75%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-505
ACCID : MI0004706
PARENT : mmu-mir-505
CHROMOSOME : X
START : 57647578
STOP : 57647667
OFFSET : 56..77
SEQUENCE : CGTCAACACTTGCTGGTTTTCT
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________________
AAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA REF X 57647578 - 57647667
CGTCAACACTTGCTGGTTTTCT MATURE X 57647634 - 57647744 mmu-miR-505 -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................................GTCAACACTTGCTGGTTTTCTC............. read_318334_0_0_2_0_0_0 MATURE 2 50.00 2 50.00 0 0 22
........................................................GTCAACACTTGCTGGTTTT................ read_226115_0_1_0_0_0_0 MATURE 1 25.00 1 25.00 0 0 19
........................................................GTCAACACTTGCTGGTTTTCT.............. read_317329_0_1_0_0_0_0 MATURE 1 25.00 1 25.00 0 0 21
---------- ---------- ----------
4 4 0
(100.00) (0.00)
*** OTHER ***
__________________________________________________________________________________________
AAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA REF X 57647578 - 57647667
CGTCAACACTTGCTGGTTTTCT MATURE X 57647634 - 57647744 mmu-miR-505 -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................GGAGCCAGGAAGTATTGATGTT................................................. read_383335_3_4_3_1_2_0 OTHER 13 39.39 10 45.45 3 27.27 22
....................GGAGCCAGGAAGTATTGATGT.................................................. read_276264_3_3_2_0_1_1 OTHER 10 30.30 8 36.36 2 18.18 21
....................GGAGCCAGGAAGTATTGATGTTT................................................ read_343749_1_1_0_0_0_3 OTHER 5 15.15 2 9.09 3 27.27 23
....................GGAGCCAGGAAGTATTGATG................................................... read_118516_1_0_0_0_0_1 OTHER 2 6.06 1 4.55 1 9.09 20
....................GGAGCCAGGAAGTATTGATGTTa................................................ read_182373_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 9.09 a 22
....................GGAGCCAGGAAGTATTaATGTTT................................................ read_204922_0_1_0_0_0_0 OTHER 1 3.03 1 4.55 0 0.00 16A6
........................CCAGGAAGTATTGATGT.................................................. read_222099_0_0_0_1_0_0 OTHER 1 3.03 0 0.00 1 9.09 17
---------- ---------- ----------
33 22 11
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 4 0 4 10.81%
OTHER 22 11 33 89.19%
---------- ---------- ----------
26 11 37
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