[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************
ID                 : mmu-mir-503
DESCRIPTION        : mmu-mir-503 MI0003538 Mus musculus miR-503 stem-loop
CHROMOSOME         : X
SPAN               : 50407161 - 50407231
LENGTH             : 71
SEQUENCE           : TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA
OVERHANG THRESHOLD : 75%
********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-503
ACCID      : MI0003538
PARENT     : mmu-mir-503
CHROMOSOME : X
START      : 50407161
STOP       : 50407231
OFFSET     : 6..28
SEQUENCE   : TAGCAGCGGGAACAGTACTGCAG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-503*
ACCID      : MI0003538
PARENT     : mmu-mir-503
CHROMOSOME : X
START      : 50407161
STOP       : 50407231
OFFSET     : 47..68
SEQUENCE   : GAGTATTGTTTCCACTGCCTGG
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________
TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA REF                  X                    50407161 - 50407231  
     TAGCAGCGGGAACAGTACTGCAG                                            MATURE               X                    50407167 - 50407259  mmu-miR-503          -                    
                                              GAGTATTGTTTCCACTGCCTGG    MATURESTAR           X                    50407208 - 50407299  mmu-miR-503*         -                    
_______________________________________________________________________

                                                                   -SEQ-                        -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......AGCAGCGGGAACAGTACTGCAG............................................   read_150588_26_35_24_9_11_8       MATURE          113        46.69           85        46.70           28        46.67                        22   
......AGCAGCGGGAACAGTACTGCAGT...........................................      read_156925_11_8_8_1_2_4       MATURE           34        14.05           27        14.84            7        11.67                        23   
......AGCAGCGGGAACAGTACTGCA.............................................        read_19934_6_2_4_3_2_2       MATURE           19         7.85           12         6.59            7        11.67                        21   
......AGCAGCGGGAACAGTACT................................................       read_309088_1_3_1_0_0_2       MATURE            7         2.89            5         2.75            2         3.33                        18   
......AGCAGCGGGAACAGTACTGC..............................................       read_274443_0_2_2_0_0_1       MATURE            5         2.07            4         2.20            1         1.67                        20   
......AGCAGCGGGAACAGTACTG...............................................       read_116138_1_2_0_0_1_1       MATURE            5         2.07            3         1.65            2         3.33                        19   
......AGCAGCGGGAACAGcACTGCAG............................................       read_254337_3_2_0_0_0_0       MATURE            5         2.07            5         2.75            0         0.00                      14C7   
......AGCAGCGGGcACAGTACTGCAG............................................       read_139734_1_0_0_1_1_1       MATURE            4         1.65            1         0.55            3         5.00                      9C12   
......AGCAGCGGGAACAGaACTGCAG............................................       read_100208_1_2_1_0_0_0       MATURE            4         1.65            4         2.20            0         0.00                      14A7   
......AGCAGCGGGAACAGTACTGa..............................................        read_80162_0_2_1_1_0_0       MATURE            4         1.65            3         1.65            1         1.67            a           19   
......AGCAGCGGGAACAGTAC.................................................        read_26051_0_1_0_1_0_0       MATURE            2         0.83            1         0.55            1         1.67                        17   
......AGCAGCGGGAACAGTACTGCAt............................................       read_214322_1_0_1_0_0_0       MATURE            2         0.83            2         1.10            0         0.00            t           21   
......AGCAGCGGGAACAGTACTaaa.............................................       read_148334_0_0_1_1_0_0       MATURE            2         0.83            1         0.55            1         1.67          aaa           18   
......AGCAGCGGGcACAGTACTGCA.............................................       read_281257_1_0_0_0_0_1       MATURE            2         0.83            1         0.55            1         1.67                      9C11   
......AGCAGCGGGAACAGgACTGCAG............................................        read_31731_1_0_0_0_0_1       MATURE            2         0.83            1         0.55            1         1.67                      14G7   
......AGCAGCGGGAACAGTACTGCcg............................................       read_342955_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         1.67           cg           20   
......AGCAGCGGGAACAGTACTtaag............................................       read_339874_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00         taag           18   
......AGCAGCGGGAACAGTAaTGCAG............................................       read_311388_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      16A5   
......AGCAGCGGGAACAaTACTGCAG............................................       read_197414_0_1_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      13A8   
......AGCAGCGGGAACAGTACTGCcGTt..........................................        read_76432_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00            t         20C2   
......AGCAGCGGGAACAGTACTGCAtt...........................................       read_386024_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00           tt           21   
......AGCAGCGGGAACAGTACTaaaa............................................        read_82559_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00         aaaa           18   
......AGCAGCGGGAACAGTACTGCgGT...........................................        read_76416_0_1_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      20G2   
......AGCAGCGaGAACAGTACTGCAG............................................       read_261497_0_1_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      7A14   
......AGCAGCGGGAACAGTACTGtcg............................................       read_255068_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00          tcg           19   
......AGCAGCGGGAACAaTACTGCA.............................................       read_344435_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      13A7   
......AGCAGCGGGAACAGTACTtCAG............................................       read_131917_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      18T3   
......AGCAGCGtGAACAGTACTGCAG............................................       read_301244_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      7T14   
......AGCAGCGGGAACAGaACTGCAGT...........................................       read_309617_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      14A8   
..........GCGGGAACAGTACTGCAG............................................       read_394512_0_0_0_1_0_0       MATURE            1         0.41            0         0.00            1         1.67                        18   
......AGCAGCGGGAACAGTACTGCAGTa..........................................       read_347086_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00            a           23   
......cGCAGCGGGAACAGTACTGCAG............................................       read_208522_0_0_0_0_1_0       MATURE            1         0.41            0         0.00            1         1.67                        21   
...........CGGGAACAGTACTGCAG............................................       read_357233_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                        17   
......AGCAGCGGGAACAGTACTaa..............................................       read_155063_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         1.67           aa           18   
......AGCAGCGGGAACAGgACTGCAGT...........................................        read_92986_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      14G8   
......AGCAGCGGGAACAGTACTGCAGa...........................................       read_368919_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00            a           22   
......AGCAGCGGGAACAGTACTGaAG............................................       read_405621_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      19A2   
......AGCAGCGGGAACAtTACTGCAGT...........................................       read_293361_0_0_1_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      13T9   
......AGCAGCGGGAACAGTAaTGCAGa...........................................        read_86403_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00            a         16A5   
..........GCGGGAACAGTACTGCAGT...........................................       read_125418_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                        19   
......AGCAGCGGGAACAGTACTGCt.............................................       read_368658_0_1_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00            t           20   
......AGCAGCGGGAACAGTACTGCAa............................................       read_218458_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         1.67            a           21   
......AGCAGCGGGAACAGcACTGCA.............................................        read_10717_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      14C6   
......AGCAGCGGGAACAGTACTGaa.............................................       read_161424_0_1_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00           aa           19   
......AGCAGCGGGAACAGTACTGaaa............................................       read_107829_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00          aaa           19   
......AGCAGCGGGAACAGTACTGgAG............................................       read_371689_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00                      19G2   
......AGCAGCGGGAACAGTACTGCAGTt..........................................       read_108521_1_0_0_0_0_0       MATURE            1         0.41            1         0.55            0         0.00            t           23   
                                                                                                                      ----------                ----------                ----------   
                                                                                                                             242                       182                        60                                          
                                                                                                                                                   (75.21)                   (24.79)                                       




*** MATURESTAR ***
_______________________________________________________________________
TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA REF                  X                    50407161 - 50407231  
     TAGCAGCGGGAACAGTACTGCAG                                            MATURE               X                    50407167 - 50407259  mmu-miR-503          -                    
                                              GAGTATTGTTTCCACTGCCTGG    MATURESTAR           X                    50407208 - 50407299  mmu-miR-503*         -                    
_______________________________________________________________________

                                                                   -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................AGTATTGTTTCCACTGCCTGt....   read_412176_0_1_0_0_0_0   MATURESTAR            1       100.00            1       100.00            0            0            t           20   
                                                                                                                  ----------                ----------                ----------   
                                                                                                                           1                         1                         0                                          
                                                                                                                                              (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             182              60             242          99.59%
     MATURESTAR               1               0               1           0.41%
                     ----------      ----------      ----------                
                            183              60             243                



[END]
