[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************
ID : mmu-mir-501
DESCRIPTION : mmu-mir-501 MI0004703 Mus musculus miR-501 stem-loop
CHROMOSOME : X
SPAN : 6818369 - 6818477
LENGTH : 109
SEQUENCE : CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-501-3p
ACCID : MI0004703
PARENT : mmu-mir-501
CHROMOSOME : X
START : 6818369
STOP : 6818477
OFFSET : 61..82
SEQUENCE : AATGCACCCGGGCAAGGATTTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-501-5p
ACCID : MI0004703
PARENT : mmu-mir-501
CHROMOSOME : X
START : 6818369
STOP : 6818477
OFFSET : 24..45
SEQUENCE : AATCCTTTGTCCCTGGGTGAAA
STRAND : -
******************************
*** MATURE-3P ***
_____________________________________________________________________________________________________________
CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG REF X 6818369 - 6818477
AATGCACCCGGGCAAGGATTTG MATURE-3P X 6818430 - 6818559 mmu-miR-501-3p -
AATCCTTTGTCCCTGGGTGAAA MATURE-5P X 6818393 - 6818522 mmu-miR-501-5p -
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................ATGCACCCGGGCAAGGATTTG............................ read_113697_6_11_3_5_3_3 MATURE-3P 31 31.96 20 31.75 11 32.35 21
.............................................................ATGCACCCGGGCAAGGATTTGG........................... read_292755_4_3_5_2_5_2 MATURE-3P 21 21.65 12 19.05 9 26.47 22
.............................................................ATGCACCCGGGCAAGGATTTGt........................... read_105302_5_6_1_0_2_0 MATURE-3P 14 14.43 12 19.05 2 5.88 t 21
.............................................................ATGCACCCGGGCAAGGATTTGa........................... read_92033_0_2_1_1_1_1 MATURE-3P 6 6.19 3 4.76 3 8.82 a 21
.............................................................ATGCACCCGGGCAAGGATT.............................. read_393271_0_2_0_2_0_1 MATURE-3P 5 5.15 2 3.17 3 8.82 19
.............................................................ATGCACCCGGGCAAGGATTT............................. read_116727_2_1_0_1_1_0 MATURE-3P 5 5.15 3 4.76 2 5.88 20
.............................................................ATGCACCCGGGCAAGGATTTGGt.......................... read_212631_0_1_1_0_0_1 MATURE-3P 3 3.09 2 3.17 1 2.94 t 22
.............................................................ATGCACCCGGGCAAGGAT............................... read_372921_0_0_0_1_0_0 MATURE-3P 1 1.03 0 0.00 1 2.94 18
.............................................................ATGCACCCGGGCAAGGgTTTGGt.......................... read_312536_0_0_1_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 t 16G5
.............................................................ATGCACCCGGGCAcGGATTTG............................ read_221563_0_0_0_1_0_0 MATURE-3P 1 1.03 0 0.00 1 2.94 13C7
.............................................................ATGCACCCGGGCAAtGATTTG............................ read_303132_1_0_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 14T6
.............................................................ATGCACCCGGGCAAGGcTTTGa........................... read_10308_0_0_0_0_1_0 MATURE-3P 1 1.03 0 0.00 1 2.94 a 16C4
.............................................................ATGCACCCGGGCAAGGA................................ read_52345_0_1_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 17
.............................................................ATGCACCCGGGaAAGGATTTG............................ read_218852_0_1_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 11A9
.............................................................ATGCACCCGGGCAAGGATTTt............................ read_237943_0_1_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 t 20
............................................................AATGCACCCGGGCAAGGATTTG............................ read_169906_1_0_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 22
.............................................................ATGCACCCGGGCAAGGATTTta........................... read_91362_0_0_1_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 ta 20
.............................................................ATGCACCCGGGCAAaGATTTGG........................... read_251523_1_0_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 14A7
.............................................................ATGCACCCGGGCAAGGATTTa............................ read_31207_1_0_0_0_0_0 MATURE-3P 1 1.03 1 1.59 0 0.00 a 20
---------- ---------- ----------
97 63 34
(64.95) (35.05)
*** MATURE-5P ***
_____________________________________________________________________________________________________________
CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG REF X 6818369 - 6818477
AATGCACCCGGGCAAGGATTTG MATURE-3P X 6818430 - 6818559 mmu-miR-501-3p -
AATCCTTTGTCCCTGGGTGAAA MATURE-5P X 6818393 - 6818522 mmu-miR-501-5p -
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................ATCCTTTGTCCCTGGGTGA................................................................... read_231345_1_2_4_0_0_0 MATURE-5P 7 41.18 7 58.33 0 0.00 19
........................ATCCTTTGTCCCTGGGTGAAAATG.............................................................. read_76209_0_1_1_1_0_0 MATURE-5P 3 17.65 2 16.67 1 20.00 24
........................ATCCTTTGTCCCTGGGTGAAAA................................................................ read_302977_1_0_0_1_0_1 MATURE-5P 3 17.65 1 8.33 2 40.00 22
........................ATCCTTTGTCCCTGGGgGAAAATG.............................................................. read_198984_0_0_0_0_0_1 MATURE-5P 1 5.88 0 0.00 1 20.00 16G7
........................ATCCTTTGTCCCTGGGTGAAc................................................................. read_51374_0_1_0_0_0_0 MATURE-5P 1 5.88 1 8.33 0 0.00 c 20
........................ATCCTTTGTCCCTGGGTGAA.................................................................. read_255909_0_1_0_0_0_0 MATURE-5P 1 5.88 1 8.33 0 0.00 20
........................ATCCTTTGTCCCTGGGTGAAA................................................................. read_294873_0_0_0_0_0_1 MATURE-5P 1 5.88 0 0.00 1 20.00 21
---------- ---------- ----------
17 12 5
(70.59) (29.41)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 63 34 97 85.09%
MATURE-5P 12 5 17 14.91%
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75 39 114
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