[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************************************
ID : mmu-mir-500
DESCRIPTION : mmu-mir-500 MI0004702 Mus musculus miR-500 stem-loop
CHROMOSOME : X
SPAN : 6814809 - 6814900
LENGTH : 92
SEQUENCE : CTCCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGAGC
OVERHANG THRESHOLD : 75%
*****************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-500
ACCID : MI0004702
PARENT : mmu-mir-500
CHROMOSOME : X
START : 6814809
STOP : 6814900
OFFSET : 59..80
SEQUENCE : AATGCACCTGGGCAAGGGTTCA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________________
CTCCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGAGC REF X 6814809 - 6814900
AATGCACCTGGGCAAGGGTTCA MATURE X 6814868 - 6814980 mmu-miR-500 -
____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................................ATGCACCTGGGCAAGGGTTC.............. read_119121_31_29_25_26_25_33 MATURE 169 26.61 85 24.64 84 28.97 20
...........................................................ATGCACCTGGGCAAGGGTTCA............. read_390749_37_37_24_14_26_23 MATURE 161 25.35 98 28.41 63 21.72 21
...........................................................ATGCACCTGGGCAAGGGTTCAt............ read_150553_15_10_10_3_5_8 MATURE 51 8.03 35 10.14 16 5.52 t 21
...........................................................ATGCACCTGGGCAAGGGTT............... read_228376_8_9_10_5_10_8 MATURE 50 7.87 27 7.83 23 7.93 19
...........................................................ATGCACCTGGGCAAGGGTTCAG............ read_5572_2_0_2_5_12_8 MATURE 29 4.57 4 1.16 25 8.62 22
...........................................................ATGCACCTGGGCAAGGGTTCAGt........... read_134214_3_5_6_4_2_5 MATURE 25 3.94 14 4.06 11 3.79 t 22
...........................................................ATGCACCTGGGCAAGGGTTCt............. read_304408_5_5_2_4_2_2 MATURE 20 3.15 12 3.48 8 2.76 t 20
...........................................................ATGCACCTGGGCAAGGG................. read_130593_1_0_0_1_5_8 MATURE 15 2.36 1 0.29 14 4.83 17
...........................................................ATGCACCTGGGCAAGGGTTCAtt........... read_78814_4_3_3_1_2_1 MATURE 14 2.20 10 2.90 4 1.38 tt 21
...........................................................ATGCACCTGGGCAAGGGTTa.............. read_304276_4_3_2_0_1_0 MATURE 10 1.57 9 2.61 1 0.34 a 19
...........................................................ATGCACCTGGGCAAGGGT................ read_371153_1_1_2_1_1_0 MATURE 6 0.94 4 1.16 2 0.69 18
...........................................................ATGCACCTGGGCAAGGGTTt.............. read_282664_0_2_0_1_0_2 MATURE 5 0.79 2 0.58 3 1.03 t 19
...........................................................ATGCACCTGGGCAAGGGTTCc............. read_274741_1_2_0_0_1_1 MATURE 5 0.79 3 0.87 2 0.69 c 20
...........................................................ATGCACCTGGGCAAGGGTTaa............. read_306518_2_0_0_1_1_1 MATURE 5 0.79 2 0.58 3 1.03 aa 19
...........................................................ATGCACCTGGGCAcGGGTTC.............. read_326127_0_0_1_1_0_1 MATURE 3 0.47 1 0.29 2 0.69 13C6
...........................................................ATGCACCTGGGCAAGGGTTtt............. read_97047_0_0_0_1_0_1 MATURE 2 0.31 0 0.00 2 0.69 tt 19
...............................................................ACCTGGGCAAGGGTTCAG............ read_162905_0_0_0_1_0_1 MATURE 2 0.31 0 0.00 2 0.69 18
...........................................................ATGCACCTGGGCAAtGGTTCA............. read_294749_2_0_0_0_0_0 MATURE 2 0.31 2 0.58 0 0.00 14T6
...........................................................ATGCACCTGGGCAAGGGgTC.............. read_208586_1_0_1_0_0_0 MATURE 2 0.31 2 0.58 0 0.00 17G2
...........................................................ATGCACCTGGGCAAGGGgTCAGA........... read_153098_1_1_0_0_0_0 MATURE 2 0.31 2 0.58 0 0.00 17G5
...........................................................ATGCACCTGGGCAAGGGTTat............. read_84634_0_0_0_0_1_1 MATURE 2 0.31 0 0.00 2 0.69 at 19
...........................................................ATGCACCTGGGCAAGGGTTCtt............ read_124344_1_0_0_0_1_0 MATURE 2 0.31 1 0.29 1 0.34 tt 20
...........................................................ATGCACCTGGGCAAGGGTTCcg............ read_282400_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 cg 20
...........................................................ATGCACCTGGGCAAGGGTTCAGtg.......... read_56150_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 tg 22
...........................................................ATGCACCTGGGCAcGGGTTCA............. read_280206_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 13C7
...........................................................ATGCACCTGGGCAAGGGTTCAc............ read_27720_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 c 21
...........................................................ATGCACCTGGGCAAGGGTTCAta........... read_20448_0_0_0_0_1_0 MATURE 1 0.16 0 0.00 1 0.34 ta 21
...........................................................ATGCACCTGGGCAAGGGTTCgt............ read_89271_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 gt 20
...........................................................ATGCACCTGGGCAAGGGgTCAG............ read_400586_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 17G4
...........................................................ATGCACCTGGGCAAGGGTTCAGAaa......... read_177478_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 aa 23
...........................................................ATGCACCTGGGCcAGGGTTCA............. read_328435_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 12C8
...........................................................ATGCACCTGGGCtAGGGTTC.............. read_247795_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 12T7
...........................................................ATGCACCTGGGCAAGGGTata............. read_31417_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 ata 18
...........................................................ATGCACCTGGGCAAGGGTTCg............. read_238831_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 g 20
...........................................................ATtCACCTGGGCAAGGGTTC.............. read_405135_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 2T17
...........................................................ATGCACCTGGGCAAGGGTTaAG............ read_321775_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 19A2
...........................................................ATGCACCTGGGCAAaGGTTC.............. read_114748_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 14A5
...........................................................ATGCACCTGGGCAAGGGTTCgg............ read_30821_0_0_0_0_1_0 MATURE 1 0.16 0 0.00 1 0.34 gg 20
...........................................................ATGCACCTGGGCAAGGGTTCAGA........... read_239569_0_0_0_0_1_0 MATURE 1 0.16 0 0.00 1 0.34 23
...........................................................ATGCACCTGGGCAAGGGTTCAat........... read_335782_0_0_0_0_1_0 MATURE 1 0.16 0 0.00 1 0.34 at 21
...........................................................ATGCACCTGGGCAAcGGTTCA............. read_27025_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 14C6
...........................................................ATGCACCTGGGCgAGGGTTCA............. read_232255_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 12G8
...........................................................ATGCACCTGGGCAgGGGTTCAtt........... read_383107_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 tt 13G7
...........................................................ATGCACCTGGGtAAGGGTTCA............. read_211070_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 11T9
...........................................................ATGCACCTGGGCAAaGGTTCA............. read_53927_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 14A6
...........................................................ATGCACCTGGGCAAaGGTTCAGt........... read_263747_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 t 14A7
...........................................................ATGCACCTGGaCAAGGGTTC.............. read_73982_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 10A9
...........................................................ATGCACCTGGGCAgGGGTTCA............. read_331918_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 13G7
...........................................................ATGCgCCTGGGCAAGGGTTC.............. read_306352_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 4G15
...........................................................ATGCACCTGGGCAAGGGTTCAa............ read_347730_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 a 21
...........................................................ATGCACCTGGGCAAGGGTTCAGtt.......... read_139849_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 tt 22
...........................................................ATGCACCTGGGCAAGGcTTCAt............ read_361456_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 t 16C4
...........................................................ATGCACCTGGGCAAGGGTTCcatt.......... read_370548_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 catt 20
...........................................................cTGCACCTGGGCAAGGGTTCAGt........... read_29620_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 t 21
...............................................................ACCTGGGCAAGGGTTCAGt........... read_412016_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 t 18
...........................................................ATGCACCTGGGtAAGGGTTC.............. read_248201_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 11T8
...........................................................ATGCACCTGGGCAAGGGTgCAtt........... read_323741_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 tt 18G2
...........................................................ATGCACCTGGGCAAGGGTatt............. read_303733_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 att 18
...........................................................ATGCACCTGGGCcAGGGTTCAt............ read_128640_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 t 12C8
...........................................................ATGCACCTGGGCAAGGGcTCA............. read_80535_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 17C3
...........................................................ATGtACCTGGGCAAGGGTTCA............. read_339234_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 3T17
...........................................................ATGCACCTGGtCAAGGGTTCA............. read_49022_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 10T10
...........................................................ATGCACCTGGGCAAGGtTTCAG............ read_262826_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 16T5
..............................................................CACCTGGGCAAGGGTTCA............. read_322217_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 18
...........................................................ATGCACCTGGGCAtGGGTTC.............. read_303460_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 13T6
...........................................................ATGCACCTtGGCAAGGGTTCAtt........... read_214499_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 tt 8T12
...........................................................ATGCACCTGGGCAAGGGcTCAt............ read_317256_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 t 17C3
..............................................................CACCTGGGCAAGGGTTC.............. read_118435_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 17
...........................................................ATGCACCTGGGCAtGGGTTCA............. read_401417_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 13T7
...........................................................cTGCACCTGGGCAAGGGTTt.............. read_362111_0_0_0_0_0_1 MATURE 1 0.16 0 0.00 1 0.34 t 18
...........................................................ATGCACCTGGGCAAGGGTat.............. read_411875_1_0_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 at 18
...........................................................ATGCACCTaGGCAAGGGTTCA............. read_348846_0_0_0_1_0_0 MATURE 1 0.16 0 0.00 1 0.34 8A12
...........................................................ATGCACCTGGGCAAGGGgTCA............. read_277814_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 17G3
...........................................................ATGCACCTGGGCAAGGGTTCttt........... read_381874_0_1_0_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 ttt 20
...........................................................ATGCACCTGGGCAAGGGcTCAGt........... read_175997_0_0_1_0_0_0 MATURE 1 0.16 1 0.29 0 0.00 t 17C4
---------- ---------- ----------
635 345 290
(54.33) (45.67)
*** OTHER ***
____________________________________________________________________________________________
CTCCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGAGC REF X 6814809 - 6814900
AATGCACCTGGGCAAGGGTTCA MATURE X 6814868 - 6814980 mmu-miR-500 -
____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................ATCCTTGCTATCTGGtTGCTTAtt................................................ read_103542_0_0_0_0_0_1 OTHER 1 16.67 0 0.00 1 50.00 tt 15T6
.....................ATCCTTGCTATCTGGGTGCTTAt................................................. read_349261_1_0_0_0_0_0 OTHER 1 16.67 1 25.00 0 0.00 t 22
....................AATCCTTGCTATCTGGGTGCTT................................................... read_8615_0_0_0_0_1_0 OTHER 1 16.67 0 0.00 1 50.00 22
.....................ATCCTTGCTATCTGGGTGCTTAGT................................................ read_153730_0_1_0_0_0_0 OTHER 1 16.67 1 25.00 0 0.00 24
.....................ATCCTTGCTATCTGGGTGCTT................................................... read_255128_0_1_0_0_0_0 OTHER 1 16.67 1 25.00 0 0.00 21
.....................ATCCTTGCTATCTGGGTGCTTAG................................................. read_316959_0_1_0_0_0_0 OTHER 1 16.67 1 25.00 0 0.00 23
---------- ---------- ----------
6 4 2
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 345 290 635 99.06%
OTHER 4 2 6 0.94%
---------- ---------- ----------
349 292 641
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