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REFERENCE HAIRPIN
*********************************************************************************************************
ID                 : mmu-mir-497
DESCRIPTION        : mmu-mir-497 MI0004636 Mus musculus miR-497 stem-loop
CHROMOSOME         : 11
SPAN               : 70048219 - 70048302
LENGTH             : 84
SEQUENCE           : CCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTA
OVERHANG THRESHOLD : 75%
*********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-497
ACCID      : MI0004636
PARENT     : mmu-mir-497
CHROMOSOME : 11
START      : 70048219
STOP       : 70048302
OFFSET     : 14..35
SEQUENCE   : CAGCAGCACACTGTGGTTTGTA
STRAND     : +
******************************



*** MATURE ***
____________________________________________________________________________________
CCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTA REF                  11                   70048219 - 70048302  
             CAGCAGCACACTGTGGTTTGTA                                                  MATURE               11                   70048233 - 70048337  mmu-miR-497          +                    
____________________________________________________________________________________

                                                                                -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............AGCAGCACACTGTGGTTTGT...................................................   read_171943_28_26_30_10_11_18       MATURE          123        69.49           84        65.62           39        79.59                        20   
..............AGCAGCACACTGTGGTTTGTA..................................................          read_29600_7_8_4_0_2_0       MATURE           21        11.86           19        14.84            2         4.08                        21   
..............AGCAGCACACTGTGGTTTtt...................................................         read_229348_1_0_4_0_3_0       MATURE            8         4.52            5         3.91            3         6.12           tt           18   
..............AGCAGCACACTGTGGTTTGTt..................................................         read_199085_1_1_2_0_1_0       MATURE            5         2.82            4         3.12            1         2.04            t           20   
..............AGCAGCACACTGTGGTTTGTAt.................................................         read_158295_2_2_0_0_0_1       MATURE            5         2.82            4         3.12            1         2.04            t           21   
...............GCAGCACACTGTGGTTTGT...................................................          read_24232_1_1_1_0_0_0       MATURE            3         1.69            3         2.34            0         0.00                        19   
..............AGCAGCACACTGTGGTTTGTAa.................................................         read_172333_0_1_1_0_0_0       MATURE            2         1.13            2         1.56            0         0.00            a           21   
..............AGCAGCACACTGTGGTTTGa...................................................          read_71403_0_1_0_1_0_0       MATURE            2         1.13            1         0.78            1         2.04            a           19   
..............AGCAGCACACTGTGGTTTGTAg.................................................         read_375729_0_1_0_0_0_0       MATURE            1         0.56            1         0.78            0         0.00            g           21   
...............GCAGCACACTGTGGTTTGTAa.................................................         read_149763_0_1_0_0_0_0       MATURE            1         0.56            1         0.78            0         0.00            a           20   
...............GCAGCACACTGTGGTTTGTACt................................................         read_406631_0_0_1_0_0_0       MATURE            1         0.56            1         0.78            0         0.00            t           21   
..............AGCAGCAtACTGTGGTTTGT...................................................         read_237537_0_0_1_0_0_0       MATURE            1         0.56            1         0.78            0         0.00                      7T12   
..............AGCAGCACACTGTGGTTTGTAtt................................................         read_404293_0_0_0_0_0_1       MATURE            1         0.56            0         0.00            1         2.04           tt           21   
..............AGCgGCACACTGTGGTTTGTAt.................................................          read_26572_1_0_0_0_0_0       MATURE            1         0.56            1         0.78            0         0.00            t         3G17   
..............AGCAGCACACTGTGGTTT.....................................................         read_356300_0_0_0_1_0_0       MATURE            1         0.56            0         0.00            1         2.04                        18   
..............AGCAGCACACTGTGGTTTGca..................................................         read_156931_0_0_1_0_0_0       MATURE            1         0.56            1         0.78            0         0.00           ca           19   
                                                                                                                                     ----------                ----------                ----------   
                                                                                                                                            177                       128                        49                                          
                                                                                                                                                                  (72.32)                   (27.68)                                       




*** OTHER ***
____________________________________________________________________________________
CCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTA REF                  11                   70048219 - 70048302  
             CAGCAGCACACTGTGGTTTGTA                                                  MATURE               11                   70048233 - 70048337  mmu-miR-497          +                    
____________________________________________________________________________________

                                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................................................CAAACCACACTGTGGTGTTAGA..........   read_120089_0_1_0_0_0_0        OTHER            1       100.00            1       100.00            0            0                        22   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        1                         1                         0                                          
                                                                                                                                                           (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             128              49             177          99.44%
          OTHER               1               0               1           0.56%
                     ----------      ----------      ----------                
                            129              49             178                



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