[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************
ID : mmu-mir-497
DESCRIPTION : mmu-mir-497 MI0004636 Mus musculus miR-497 stem-loop
CHROMOSOME : 11
SPAN : 70048219 - 70048302
LENGTH : 84
SEQUENCE : CCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTA
OVERHANG THRESHOLD : 75%
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TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-497
ACCID : MI0004636
PARENT : mmu-mir-497
CHROMOSOME : 11
START : 70048219
STOP : 70048302
OFFSET : 14..35
SEQUENCE : CAGCAGCACACTGTGGTTTGTA
STRAND : +
******************************
*** MATURE ***
____________________________________________________________________________________
CCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTA REF 11 70048219 - 70048302
CAGCAGCACACTGTGGTTTGTA MATURE 11 70048233 - 70048337 mmu-miR-497 +
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............AGCAGCACACTGTGGTTTGT................................................... read_171943_28_26_30_10_11_18 MATURE 123 69.49 84 65.62 39 79.59 20
..............AGCAGCACACTGTGGTTTGTA.................................................. read_29600_7_8_4_0_2_0 MATURE 21 11.86 19 14.84 2 4.08 21
..............AGCAGCACACTGTGGTTTtt................................................... read_229348_1_0_4_0_3_0 MATURE 8 4.52 5 3.91 3 6.12 tt 18
..............AGCAGCACACTGTGGTTTGTt.................................................. read_199085_1_1_2_0_1_0 MATURE 5 2.82 4 3.12 1 2.04 t 20
..............AGCAGCACACTGTGGTTTGTAt................................................. read_158295_2_2_0_0_0_1 MATURE 5 2.82 4 3.12 1 2.04 t 21
...............GCAGCACACTGTGGTTTGT................................................... read_24232_1_1_1_0_0_0 MATURE 3 1.69 3 2.34 0 0.00 19
..............AGCAGCACACTGTGGTTTGTAa................................................. read_172333_0_1_1_0_0_0 MATURE 2 1.13 2 1.56 0 0.00 a 21
..............AGCAGCACACTGTGGTTTGa................................................... read_71403_0_1_0_1_0_0 MATURE 2 1.13 1 0.78 1 2.04 a 19
..............AGCAGCACACTGTGGTTTGTAg................................................. read_375729_0_1_0_0_0_0 MATURE 1 0.56 1 0.78 0 0.00 g 21
...............GCAGCACACTGTGGTTTGTAa................................................. read_149763_0_1_0_0_0_0 MATURE 1 0.56 1 0.78 0 0.00 a 20
...............GCAGCACACTGTGGTTTGTACt................................................ read_406631_0_0_1_0_0_0 MATURE 1 0.56 1 0.78 0 0.00 t 21
..............AGCAGCAtACTGTGGTTTGT................................................... read_237537_0_0_1_0_0_0 MATURE 1 0.56 1 0.78 0 0.00 7T12
..............AGCAGCACACTGTGGTTTGTAtt................................................ read_404293_0_0_0_0_0_1 MATURE 1 0.56 0 0.00 1 2.04 tt 21
..............AGCgGCACACTGTGGTTTGTAt................................................. read_26572_1_0_0_0_0_0 MATURE 1 0.56 1 0.78 0 0.00 t 3G17
..............AGCAGCACACTGTGGTTT..................................................... read_356300_0_0_0_1_0_0 MATURE 1 0.56 0 0.00 1 2.04 18
..............AGCAGCACACTGTGGTTTGca.................................................. read_156931_0_0_1_0_0_0 MATURE 1 0.56 1 0.78 0 0.00 ca 19
---------- ---------- ----------
177 128 49
(72.32) (27.68)
*** OTHER ***
____________________________________________________________________________________
CCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTA REF 11 70048219 - 70048302
CAGCAGCACACTGTGGTTTGTA MATURE 11 70048233 - 70048337 mmu-miR-497 +
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................CAAACCACACTGTGGTGTTAGA.......... read_120089_0_1_0_0_0_0 OTHER 1 100.00 1 100.00 0 0 22
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 128 49 177 99.44%
OTHER 1 0 1 0.56%
---------- ---------- ----------
129 49 178
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