[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************************************************************************
ID : mmu-mir-486
DESCRIPTION : mmu-mir-486 MI0003493 Mus musculus miR-486 stem-loop
CHROMOSOME : 8
SPAN : 24253027 - 24253154
LENGTH : 128
SEQUENCE : CAGCCAGCTCTGATCTCGCCCTCCCTGAGGGGTCCTGTACTGAGCTGCCCCGAGGTCCTTCACTGTGCTCAGCTCGGGGCAGCTCAGTACAGGATGCGTCAGGGTGGGAGACAACGGGGAACAAGCCA
OVERHANG THRESHOLD : 75%
*****************************************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-486
ACCID : MI0003493
PARENT : mmu-mir-486
CHROMOSOME : 8
START : 24253027
STOP : 24253154
OFFSET : 33..54
SEQUENCE : TCCTGTACTGAGCTGCCCCGAG
STRAND : +
******************************
*** MATURE ***
________________________________________________________________________________________________________________________________
CAGCCAGCTCTGATCTCGCCCTCCCTGAGGGGTCCTGTACTGAGCTGCCCCGAGGTCCTTCACTGTGCTCAGCTCGGGGCAGCTCAGTACAGGATGCGTCAGGGTGGGAGACAACGGGGAACAAGCCA REF 8 24253027 - 24253154
TCCTGTACTGAGCTGCCCCGAG MATURE 8 24253060 - 24253208 mmu-miR-486 +
________________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................CCTGTACTGAGCTGCCCCGAGt.......................................................................... read_256633_8_11_4_5_2_3 MATURE 33 48.53 23 48.94 10 47.62 t 21
.................................CCTGTACTGAGCTGCCCCGA............................................................................ read_82653_2_1_0_1_1_1 MATURE 6 8.82 3 6.38 3 14.29 20
.................................CCTGTACTGAGCTGCCCCGAG........................................................................... read_361862_2_2_2_0_0_0 MATURE 6 8.82 6 12.77 0 0.00 21
.................................CCTGTACTGAGCTGCCCCGAGa.......................................................................... read_321026_1_2_0_0_1_1 MATURE 5 7.35 3 6.38 2 9.52 a 21
.................................CCTGTACTGAGCTGCCCCGc............................................................................ read_53466_1_1_0_0_0_1 MATURE 3 4.41 2 4.26 1 4.76 c 19
.................................CCTGTACTGAGCTGCCCCGAt........................................................................... read_398816_0_1_0_0_0_1 MATURE 2 2.94 1 2.13 1 4.76 t 20
.................................CCTGTACTGAGCTGCCCCG............................................................................. read_167660_0_1_0_1_0_0 MATURE 2 2.94 1 2.13 1 4.76 19
.................................CCTGTACTGAGCTGCCCCGAc........................................................................... read_211141_1_0_0_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 c 20
.................................CCTGTACTGAGCTGCCCCGAGtaaa....................................................................... read_114545_1_0_0_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 taaa 21
.................................CCTGTACTGAGCTGCCCCGAGta......................................................................... read_41582_1_0_0_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 ta 21
.................................CCTGTACTGAGCTGCCCCGAGaa......................................................................... read_190004_1_0_0_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 aa 21
.................................CCTGTACTGAGCTGtCCCGAGt.......................................................................... read_400761_0_0_0_0_0_1 MATURE 1 1.47 0 0.00 1 4.76 t 14T6
.................................CCTGTACTGAGCTcCCCCGAG........................................................................... read_296158_0_1_0_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 13C7
.................................CCTGTACTGAGCTGCaCCGAGt.......................................................................... read_177982_0_0_1_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 t 15A5
....................................GTACTGAGCTGCCCCGAG........................................................................... read_145606_1_0_0_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 18
.................................CCTGTACTGAGCTGCCCCGAGtt......................................................................... read_271678_0_0_1_0_0_0 MATURE 1 1.47 1 2.13 0 0.00 tt 21
.................................CCTGTACTGAGCTGCCCCGAGttt........................................................................ read_149192_0_0_0_0_0_1 MATURE 1 1.47 0 0.00 1 4.76 ttt 21
.................................CCTGTACTGAGCTGCCCCGcgt.......................................................................... read_160083_0_0_0_0_1_0 MATURE 1 1.47 0 0.00 1 4.76 cgt 19
---------- ---------- ----------
68 47 21
(69.12) (30.88)
*** OTHER ***
________________________________________________________________________________________________________________________________
CAGCCAGCTCTGATCTCGCCCTCCCTGAGGGGTCCTGTACTGAGCTGCCCCGAGGTCCTTCACTGTGCTCAGCTCGGGGCAGCTCAGTACAGGATGCGTCAGGGTGGGAGACAACGGGGAACAAGCCA REF 8 24253027 - 24253154
TCCTGTACTGAGCTGCCCCGAG MATURE 8 24253060 - 24253208 mmu-miR-486 +
________________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................................................GGGGCAGCTCAGTACAGGATG................................. read_375232_2_4_2_0_0_0 OTHER 8 47.06 8 57.14 0 0.00 21
...........................................................................GGGGCAGCTCAGTACAGGAT.................................. read_150666_0_1_0_0_1_1 OTHER 3 17.65 1 7.14 2 66.67 20
...........................................................................GGGGCAGCTCAGTACAGGATt................................. read_411333_0_0_0_1_0_0 OTHER 1 5.88 0 0.00 1 33.33 t 20
...........................................................................GGGGCAGCTCAGTACAGGAaa................................. read_127841_0_0_1_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 aa 19
...........................................................................GGGGCAGCTCAGTACAGGATGt................................ read_378316_0_0_1_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 t 21
...........................................................................GGGGCAGCTCAGTACAGGttta................................ read_78801_0_0_1_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 ttta 18
...........................................................................GGGGCAGCTCAGTACAGGATa................................. read_354421_0_1_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 a 20
...........................................................................GGGGCAGCTCAGTACAGGATGaag.............................. read_308728_1_0_0_0_0_0 OTHER 1 5.88 1 7.14 0 0.00 aag 21
---------- ---------- ----------
17 14 3
(82.35) (17.65)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 47 21 68 80.00%
OTHER 14 3 17 20.00%
---------- ---------- ----------
61 24 85
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