[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************
ID                 : mmu-mir-467d
DESCRIPTION        : mmu-mir-467d MI0005513 Mus musculus miR-467d stem-loop
CHROMOSOME         : 2
SPAN               : 10429257 - 10429341
LENGTH             : 85
SEQUENCE           : CCTGTGTGCATAAGTGCGCGCATGTATATGCGTGTATATTTTATGCATATACATACACACACCTACACACACATGCACACAGACA
OVERHANG THRESHOLD : 75%
**********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-467d
ACCID      : MI0005513
PARENT     : mmu-mir-467d
CHROMOSOME : 2
START      : 10429257
STOP       : 10429341
OFFSET     : 11..32
SEQUENCE   : TAAGTGCGCGCATGTATATGCG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-467d*
ACCID      : MI0005513
PARENT     : mmu-mir-467d
CHROMOSOME : 2
START      : 10429257
STOP       : 10429341
OFFSET     : 47..68
SEQUENCE   : ATATACATACACACACCTACAC
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________
CCTGTGTGCATAAGTGCGCGCATGTATATGCGTGTATATTTTATGCATATACATACACACACCTACACACACATGCACACAGACA REF                  2                    10429257 - 10429341  
          TAAGTGCGCGCATGTATATGCG                                                      MATURE               2                    10429268 - 10429373  mmu-miR-467d         +                    
                                              ATATACATACACACACCTACAC                  MATURESTAR           2                    10429304 - 10429409  mmu-miR-467d*        +                    
_____________________________________________________________________________________

                                                                                 -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........AAGTGCGCGCATGTATATGCG......................................................   read_385726_4_5_7_2_1_3       MATURE           22        44.00           16        42.11            6        50.00                        21   
...........AAGTGCGCGCATGTATATGC.......................................................    read_66990_2_1_5_1_0_1       MATURE           10        20.00            8        21.05            2        16.67                        20   
...........AAGTGCGCGCATGTATATGCGT.....................................................   read_174154_1_2_1_0_0_2       MATURE            6        12.00            4        10.53            2        16.67                        22   
...........AAGTGCGCGCATGTATATGCGa.....................................................    read_53208_0_1_2_0_0_1       MATURE            4         8.00            3         7.89            1         8.33            a           21   
...........AAGTGCGCGCATGTATAT.........................................................   read_223306_1_0_1_0_0_1       MATURE            3         6.00            2         5.26            1         8.33                        18   
...........AAGTGCGCGCATGTATATtc.......................................................   read_405453_0_0_1_0_0_0       MATURE            1         2.00            1         2.63            0         0.00           tc           18   
...........AAGTGCGCGCATGTATATG........................................................   read_150389_0_0_1_0_0_0       MATURE            1         2.00            1         2.63            0         0.00                        19   
..........TAAGTGCGCGCATGTATATGCG......................................................   read_403641_0_1_0_0_0_0       MATURE            1         2.00            1         2.63            0         0.00                        22   
...........AAGTGCGCGCATGTATATGgGT.....................................................   read_227315_0_1_0_0_0_0       MATURE            1         2.00            1         2.63            0         0.00                      19G2   
...........AAGTGCGCGCATGTATATGCt......................................................   read_170435_0_1_0_0_0_0       MATURE            1         2.00            1         2.63            0         0.00            t           20   
                                                                                                                                ----------                ----------                ----------   
                                                                                                                                        50                        38                        12                                          
                                                                                                                                                             (76.00)                   (24.00)                                       




*** MATURESTAR ***
_____________________________________________________________________________________
CCTGTGTGCATAAGTGCGCGCATGTATATGCGTGTATATTTTATGCATATACATACACACACCTACACACACATGCACACAGACA REF                  2                    10429257 - 10429341  
          TAAGTGCGCGCATGTATATGCG                                                      MATURE               2                    10429268 - 10429373  mmu-miR-467d         +                    
                                              ATATACATACACACACCTACAC                  MATURESTAR           2                    10429304 - 10429409  mmu-miR-467d*        +                    
_____________________________________________________________________________________

                                                                                 -SEQ-                   -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................ATACATACACACACCTACAC..................   read_80419_1_0_0_0_0_0   MATURESTAR            1       100.00            1       100.00            0            0                        20   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        1                         1                         0                                          
                                                                                                                                                           (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              38              12              50          98.04%
     MATURESTAR               1               0               1           1.96%
                     ----------      ----------      ----------                
                             39              12              51                



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