[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************
ID                 : mmu-mir-466c
DESCRIPTION        : mmu-mir-466c MI0005505 Mus musculus miR-466c stem-loop
CHROMOSOME         : 2
SPAN               : 10412966 - 10413049
LENGTH             : 84
SEQUENCE           : GTATATGTGTTGATGTGTGTGTGCATGTACATATGTGAATATGATATACATATACATACACGCACACATAAGACACATATGAGC
OVERHANG THRESHOLD : 75%
*********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-466c-3p
ACCID      : MI0005505
PARENT     : mmu-mir-466c
CHROMOSOME : 2
START      : 10412966
STOP       : 10413049
OFFSET     : 51..73
SEQUENCE   : TATACATACACGCACACATAAGA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-466c-5p
ACCID      : MI0005505
PARENT     : mmu-mir-466c
CHROMOSOME : 2
START      : 10412966
STOP       : 10413049
OFFSET     : 12..33
SEQUENCE   : GATGTGTGTGTGCATGTACATA
STRAND     : +
******************************



*** MATURE-3P ***
____________________________________________________________________________________
GTATATGTGTTGATGTGTGTGTGCATGTACATATGTGAATATGATATACATATACATACACGCACACATAAGACACATATGAGC REF                  2                    10412966 - 10413049  
                                                  TATACATACACGCACACATAAGA            MATURE-3P            2                    10413017 - 10413122  mmu-miR-466c-3p      +                    
           GATGTGTGTGTGCATGTACATA                                                    MATURE-5P            2                    10412978 - 10413082  mmu-miR-466c-5p      +                    
____________________________________________________________________________________

                                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................ATACATACACGCACACATAAGA............   read_275954_2_1_0_0_0_0    MATURE-3P            3        30.00            3        37.50            0         0.00                        22   
...................................................ATACATACACGCACACAT................   read_126234_1_0_1_0_0_0    MATURE-3P            2        20.00            2        25.00            0         0.00                        18   
...................................................ATACATACACGCACACATAAG.............    read_35929_0_0_1_0_0_1    MATURE-3P            2        20.00            1        12.50            1        50.00                        21   
...................................................ATACATACACGCACACATAA..............   read_309563_0_0_1_0_1_0    MATURE-3P            2        20.00            1        12.50            1        50.00                        20   
.....................................................ACATACACGCACACATAA..............   read_351745_0_0_1_0_0_0    MATURE-3P            1        10.00            1        12.50            0         0.00                        18   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                       10                         8                         2                                          
                                                                                                                                                            (80.00)                   (20.00)                                       




*** MATURE-5P ***
____________________________________________________________________________________
GTATATGTGTTGATGTGTGTGTGCATGTACATATGTGAATATGATATACATATACATACACGCACACATAAGACACATATGAGC REF                  2                    10412966 - 10413049  
                                                  TATACATACACGCACACATAAGA            MATURE-3P            2                    10413017 - 10413122  mmu-miR-466c-3p      +                    
           GATGTGTGTGTGCATGTACATA                                                    MATURE-5P            2                    10412978 - 10413082  mmu-miR-466c-5p      +                    
____________________________________________________________________________________

                                                                                -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........GATGTGTGTGTGCATGTACAT.....................................................   read_305018_0_3_0_0_0_1    MATURE-5P            4        80.00            3        75.00            1       100.00                        21   
...........GATGTGTGTGTGCATGTAC.......................................................   read_411256_0_0_1_0_0_0    MATURE-5P            1        20.00            1        25.00            0         0.00                        19   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        5                         4                         1                                          
                                                                                                                                                            (80.00)                   (20.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               8               2              10          66.67%
      MATURE-5P               4               1               5          33.33%
                     ----------      ----------      ----------                
                             12               3              15                



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