[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-429
DESCRIPTION        : mmu-mir-429 MI0001642 Mus musculus miR-429 stem-loop
CHROMOSOME         : 4
SPAN               : 155428014 - 155428096
LENGTH             : 83
SEQUENCE           : CCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGCATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCACGGC
OVERHANG THRESHOLD : 75%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-429
ACCID      : MI0001642
PARENT     : mmu-mir-429
CHROMOSOME : 4
START      : 155428014
STOP       : 155428096
OFFSET     : 51..72
SEQUENCE   : TAATACTGTCTGGTAATGCCGT
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________
CCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGCATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCACGGC REF                  4                    155428014 - 155428096 
                                                  TAATACTGTCTGGTAATGCCGT            MATURE               4                    155428065 - 155428168 mmu-miR-429          -                    
___________________________________________________________________________________

                                                                               -SEQ-                        -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................AATACTGTCTGGTAATGCCGT............   read_101120_46_54_28_6_9_10       MATURE          153        59.07          128        60.66           25        52.08                        21   
...................................................AATACTGTCTGGTAATGCCG.............     read_132507_10_18_5_4_2_2       MATURE           41        15.83           33        15.64            8        16.67                        20   
...................................................AATACTGTCTGGTAATGCCGTt...........       read_107253_1_7_6_0_1_3       MATURE           18         6.95           14         6.64            4         8.33            t           21   
...................................................AATACTGTCTGGTAATGCCGTa...........       read_353984_3_5_1_0_0_0       MATURE            9         3.47            9         4.27            0         0.00            a           21   
...................................................AATACTGTCTGGTAATtCCGT............       read_240884_1_0_1_0_0_1       MATURE            3         1.16            2         0.95            1         2.08                      16T4   
...................................................AATACTGTCTGGTAATGCCGTtt..........       read_187644_1_1_1_0_0_0       MATURE            3         1.16            3         1.42            0         0.00           tt           21   
...................................................AATACTGTCTGGTAATGCCGTaa..........        read_34616_0_0_1_1_0_0       MATURE            2         0.77            1         0.47            1         2.08           aa           21   
...................................................AATACTGTCTGGTAATGCtGT............       read_252751_0_0_1_0_0_1       MATURE            2         0.77            1         0.47            1         2.08                      18T2   
...................................................AATACTGTCTGGTAATGCCGa............       read_252362_0_2_0_0_0_0       MATURE            2         0.77            2         0.95            0         0.00            a           20   
...................................................AATACTGTCTGGTAATGtCGT............        read_35198_0_1_1_0_0_0       MATURE            2         0.77            2         0.95            0         0.00                      17T3   
...................................................AATACTGTCTGGTAATGCCGTta..........        read_12415_0_0_1_0_1_0       MATURE            2         0.77            1         0.47            1         2.08           ta           21   
...................................................AATACTGTCTGGTAATGCCt.............        read_15356_0_1_0_0_1_0       MATURE            2         0.77            1         0.47            1         2.08            t           19   
...................................................AATACTGTCTGGTAATGCCa.............       read_248252_1_1_0_0_0_0       MATURE            2         0.77            2         0.95            0         0.00            a           19   
...................................................AATACTGTCTGGTAATGCC..............          read_602_0_0_1_0_0_1       MATURE            2         0.77            1         0.47            1         2.08                        19   
...................................................AATACTGTCTGGTAATGCCGTtta.........        read_87021_0_0_1_0_0_0       MATURE            1         0.39            1         0.47            0         0.00          tta           21   
...................................................AATACTGTCTGGTAATGC...............        read_43765_1_0_0_0_0_0       MATURE            1         0.39            1         0.47            0         0.00                        18   
...................................................AATACTGTCTGGTcATGCCGTt...........       read_198085_0_1_0_0_0_0       MATURE            1         0.39            1         0.47            0         0.00            t         13C7   
...................................................AATACTGTCTGGTAATG................       read_143322_0_0_0_0_1_0       MATURE            1         0.39            0         0.00            1         2.08                        17   
...................................................AATACTGTCTGGcAATGCCGT............       read_182752_0_0_1_0_0_0       MATURE            1         0.39            1         0.47            0         0.00                      12C8   
...................................................AATACTGTCTGGTAATtCCG.............       read_267492_0_1_0_0_0_0       MATURE            1         0.39            1         0.47            0         0.00                      16T3   
...................................................AATACTGTCTGGTAATGCag.............       read_387678_0_0_0_1_0_0       MATURE            1         0.39            0         0.00            1         2.08           ag           18   
...................................................AATACTGTCTGGTAATGCCGTgt..........       read_233948_0_0_1_0_0_0       MATURE            1         0.39            1         0.47            0         0.00           gt           21   
....................................................ATACTGTCTGGTAATGCCGT............       read_134960_0_0_1_0_0_0       MATURE            1         0.39            1         0.47            0         0.00                        20   
...................................................AATACTGTCTGGTAgTGCCG.............       read_373860_1_0_0_0_0_0       MATURE            1         0.39            1         0.47            0         0.00                      14G5   
...................................................AATACTGcCTGGTAATGCCGT............        read_42646_0_0_0_0_0_1       MATURE            1         0.39            0         0.00            1         2.08                      7C13   
...................................................AATACTGTCTGGTAATGCCtt............        read_14815_0_1_0_0_0_0       MATURE            1         0.39            1         0.47            0         0.00           tt           19   
...................................................AATACTGTCTGGTAAcGCCGT............       read_212579_1_0_0_0_0_0       MATURE            1         0.39            1         0.47            0         0.00                      15C5   
...................................................AATACcGTCTGGTAATGCCGT............       read_178387_0_0_0_0_0_1       MATURE            1         0.39            0         0.00            1         2.08                      5C15   
...................................................AATACTGTCTGGTAATGCCc.............       read_104162_0_0_0_1_0_0       MATURE            1         0.39            0         0.00            1         2.08            c           19   
...................................................AATACTGTCTGGTAATGCCGTat..........       read_105731_0_0_1_0_0_0       MATURE            1         0.39            1         0.47            0         0.00           at           21   
                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                         259                       211                        48                                          
                                                                                                                                                               (81.47)                   (18.53)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             211              48             259         100.00%
                     ----------      ----------      ----------                
                            211              48             259                



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