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REFERENCE HAIRPIN
*************************************************************************************************
ID                 : mmu-mir-421
DESCRIPTION        : mmu-mir-421 MI0005496 Mus musculus miR-421 stem-loop
CHROMOSOME         : X
SPAN               : 100768260 - 100768335
LENGTH             : 76
SEQUENCE           : CATTGTAGGCCTCATTAAATGTTTGTTGAATGAAAAAATGAATCATCAACAGACATTAATTGGGCGCCTGCTCTGT
OVERHANG THRESHOLD : 75%
*************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-421
ACCID      : MI0005496
PARENT     : mmu-mir-421
CHROMOSOME : X
START      : 100768260
STOP       : 100768335
OFFSET     : 45..67
SEQUENCE   : ATCAACAGACATTAATTGGGCGC
STRAND     : -
******************************



*** MATURE ***
____________________________________________________________________________
CATTGTAGGCCTCATTAAATGTTTGTTGAATGAAAAAATGAATCATCAACAGACATTAATTGGGCGCCTGCTCTGT REF                  X                    100768260 - 100768335 
                                            ATCAACAGACATTAATTGGGCGC          MATURE               X                    100768305 - 100768402 mmu-miR-421          -                    
____________________________________________________________________________

                                                                        -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............................................CAACAGACATTAATTGGGCGC..........   read_388932_0_2_0_1_0_3       MATURE            6        37.50            2        22.22            4        57.14                        21   
...............................................AACAGACATTAATTGGGCGCt.........   read_192687_1_0_0_2_0_0       MATURE            3        18.75            1        11.11            2        28.57            t           20   
.................................................CAGACATTAATTGGGCGCCTGt......   read_228281_2_1_0_0_0_0       MATURE            3        18.75            3        33.33            0         0.00            t           21   
..............................................CAACAGACATTAATTGGGCG...........   read_121256_0_1_0_0_0_0       MATURE            1         6.25            1        11.11            0         0.00                        20   
..............................................CAACAGACATTAATTGGGCGt..........    read_54510_0_0_0_0_0_1       MATURE            1         6.25            0         0.00            1        14.29            t           20   
................................................ACAGACATTAATTGGGCGCCTGta.....   read_320269_0_0_1_0_0_0       MATURE            1         6.25            1        11.11            0         0.00           ta           22   
................................................ACAGACATTAATTGGGCGCCTGt......   read_281716_1_0_0_0_0_0       MATURE            1         6.25            1        11.11            0         0.00            t           22   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                               16                         9                         7                                          
                                                                                                                                                    (56.25)                   (43.75)                                       




*** OTHER ***
____________________________________________________________________________
CATTGTAGGCCTCATTAAATGTTTGTTGAATGAAAAAATGAATCATCAACAGACATTAATTGGGCGCCTGCTCTGT REF                  X                    100768260 - 100768335 
                                            ATCAACAGACATTAATTGGGCGC          MATURE               X                    100768305 - 100768402 mmu-miR-421          -                    
____________________________________________________________________________

                                                                        -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........TCATTAAATGTTTGTTGAAT..............................................   read_105661_0_1_0_0_0_0        OTHER            1        50.00            1       100.00            0         0.00                        20   
...........TCATTAAATGTTTGTTGAATGA............................................   read_320187_0_0_0_0_1_0        OTHER            1        50.00            0         0.00            1       100.00                        22   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                                2                         1                         1                                          
                                                                                                                                                    (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               9               7              16          88.89%
          OTHER               1               1               2          11.11%
                     ----------      ----------      ----------                
                             10               8              18                



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