[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************************
ID                 : mmu-mir-374
DESCRIPTION        : mmu-mir-374 MI0004125 Mus musculus mir-374 stem-loop
CHROMOSOME         : X
SPAN               : 100768399 - 100768493
LENGTH             : 95
SEQUENCE           : GAAGAAATCCTACTCGGGTGGATATAATACAACCTGCTAAGTGTTCTAGCACTTAGCAGGTTGTATTATCATTGTCCGAGGTTATGGCTCTCGTC
OVERHANG THRESHOLD : 75%
********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-374
ACCID      : MI0004125
PARENT     : mmu-mir-374
CHROMOSOME : X
START      : 100768399
STOP       : 100768493
OFFSET     : 22..43
SEQUENCE   : ATATAATACAACCTGCTAAGTG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-374*
ACCID      : MI0004125
PARENT     : mmu-mir-374
CHROMOSOME : X
START      : 100768399
STOP       : 100768493
OFFSET     : 59..80
SEQUENCE   : GGTTGTATTATCATTGTCCGAG
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________________________________
GAAGAAATCCTACTCGGGTGGATATAATACAACCTGCTAAGTGTTCTAGCACTTAGCAGGTTGTATTATCATTGTCCGAGGTTATGGCTCTCGTC REF                  X                    100768399 - 100768493 
                     ATATAATACAACCTGCTAAGTG                                                     MATURE               X                    100768421 - 100768536 mmu-miR-374          -                    
                                                          GGTTGTATTATCATTGTCCGAG                MATURESTAR           X                    100768458 - 100768573 mmu-miR-374*         -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......................cATAATACAACCTGCTAAGT......................................................   read_181163_2_1_0_0_0_0       MATURE            3       100.00            3       100.00            0            0                        19   
                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                   3                         3                         0                                          
                                                                                                                                                                      (100.00)                    (0.00)                                       




*** MATURESTAR ***
_______________________________________________________________________________________________
GAAGAAATCCTACTCGGGTGGATATAATACAACCTGCTAAGTGTTCTAGCACTTAGCAGGTTGTATTATCATTGTCCGAGGTTATGGCTCTCGTC REF                  X                    100768399 - 100768493 
                     ATATAATACAACCTGCTAAGTG                                                     MATURE               X                    100768421 - 100768536 mmu-miR-374          -                    
                                                          GGTTGTATTATCATTGTCCGAG                MATURESTAR           X                    100768458 - 100768573 mmu-miR-374*         -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................................................TAGCAGGTTGTATTATCATT.......................   read_314638_1_2_3_0_1_0   MATURESTAR            7        77.78            6        85.71            1        50.00                        20   
.....................................................TAGCAGGTTGTATTATCAT........................    read_28216_0_0_0_0_1_0   MATURESTAR            1        11.11            0         0.00            1        50.00                        19   
.....................................................TAGCAGGTTGTATTATCATTt......................   read_386834_1_0_0_0_0_0   MATURESTAR            1        11.11            1        14.29            0         0.00            t           20   
                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                   9                         7                         2                                          
                                                                                                                                                                       (77.78)                   (22.22)                                       




*** OTHER ***
_______________________________________________________________________________________________
GAAGAAATCCTACTCGGGTGGATATAATACAACCTGCTAAGTGTTCTAGCACTTAGCAGGTTGTATTATCATTGTCCGAGGTTATGGCTCTCGTC REF                  X                    100768399 - 100768493 
                     ATATAATACAACCTGCTAAGTG                                                     MATURE               X                    100768421 - 100768536 mmu-miR-374          -                    
                                                          GGTTGTATTATCATTGTCCGAG                MATURESTAR           X                    100768458 - 100768573 mmu-miR-374*         -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...GAAATCCTACTCGGGTGG...........................................................................   read_347530_0_0_0_1_0_0        OTHER            1       100.00            0            0            1       100.00                        18   
                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                   1                         0                         1                                          
                                                                                                                                                                        (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               3               0               3          23.08%
     MATURESTAR               7               2               9          69.23%
          OTHER               0               1               1           7.69%
                     ----------      ----------      ----------                
                             10               3              13                



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