[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-350
DESCRIPTION : mmu-mir-350 MI0000640 Mus musculus miR-350 stem-loop
CHROMOSOME : 1
SPAN : 178702456 - 178702554
LENGTH : 99
SEQUENCE : AGATGCCTTGCTCCTACAAGAGTAAAGTGCATGCGCTTTGGGACAGTGAGGAAAATAATGTTCACAAAGCCCATACACTTTCACCCTTTAGGAGAGTTG
OVERHANG THRESHOLD : 75%
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TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-350
ACCID : MI0000640
PARENT : mmu-mir-350
CHROMOSOME : 1
START : 178702456
STOP : 178702554
OFFSET : 61..82
SEQUENCE : TTCACAAAGCCCATACACTTTC
STRAND : -
******************************
*** MATURE ***
___________________________________________________________________________________________________
AGATGCCTTGCTCCTACAAGAGTAAAGTGCATGCGCTTTGGGACAGTGAGGAAAATAATGTTCACAAAGCCCATACACTTTCACCCTTTAGGAGAGTTG REF 1 178702456 - 178702554
TTCACAAAGCCCATACACTTTC MATURE 1 178702517 - 178702636 mmu-miR-350 -
___________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................TCACAAAGCCCATACACTTTC.................. read_14617_16_26_13_4_8_5 MATURE 72 37.31 55 37.16 17 37.78 21
.............................................................TCACAAAGCCCATACACTTT................... read_346552_21_18_14_6_2_1 MATURE 62 32.12 53 35.81 9 20.00 20
.............................................................TCACAAAGCCCATACACTTTCA................. read_246359_6_6_0_4_1_0 MATURE 17 8.81 12 8.11 5 11.11 22
.............................................................TCACAAAGCCCATACACTTTCAC................ read_173732_2_2_4_1_2_1 MATURE 12 6.22 8 5.41 4 8.89 23
.............................................................TCACAAAGCCCATACACTT.................... read_344689_6_2_2_1_0_0 MATURE 11 5.70 10 6.76 1 2.22 19
.............................................................TCACAAAGCCCATACACTTTCt................. read_249064_0_0_0_1_1_0 MATURE 2 1.04 0 0.00 2 4.44 t 21
.............................................................TCACAAAGCCCATACACT..................... read_157421_0_0_0_0_2_0 MATURE 2 1.04 0 0.00 2 4.44 18
.............................................................TCACAAAtCCCATACACTTT................... read_309718_0_0_0_0_1_0 MATURE 1 0.52 0 0.00 1 2.22 7T12
.............................................................TCACAAAGCCCATACACTTg................... read_300743_0_0_0_0_0_1 MATURE 1 0.52 0 0.00 1 2.22 g 19
.............................................................TCACAAAGCCCATAgACTTTCA................. read_410640_1_0_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 14G7
.............................................................TCACAAAGCCCATAgACTTTC.................. read_217756_1_0_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 14G6
.............................................................TCACAAAGCCCATAgACTTT................... read_286772_1_0_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 14G5
.............................................................TCACAAAGCCCATAtACTTTC.................. read_128182_1_0_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 14T6
.............................................................TCAaAAAGCCCATACACTTT................... read_381059_0_0_1_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 3A16
.............................................................TCACAAAGCCCATACACTTgc.................. read_338272_0_0_1_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 gc 19
.............................................................TCACAAAGCCCATACACTTTCACa............... read_210227_0_0_0_1_0_0 MATURE 1 0.52 0 0.00 1 2.22 a 23
.............................................................TCACAAAGCCCATACACTTTCAa................ read_226791_0_1_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 a 22
.............................................................TCACAAAGCCCATACACTTTCACt............... read_327890_0_1_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 t 23
.............................................................TCACAAgGCCCATACACTTTCA................. read_19579_0_1_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 6G15
.............................................................TCACAAAGCCCATACAC...................... read_198870_0_1_0_0_0_0 MATURE 1 0.52 1 0.68 0 0.00 17
.............................................................TCACAAAGCCCATACACTTa................... read_338589_0_0_0_0_0_1 MATURE 1 0.52 0 0.00 1 2.22 a 19
................................................................CAAAGCCCATACACTTT................... read_298108_0_0_0_1_0_0 MATURE 1 0.52 0 0.00 1 2.22 17
---------- ---------- ----------
193 148 45
(76.68) (23.32)
*** OTHER ***
___________________________________________________________________________________________________
AGATGCCTTGCTCCTACAAGAGTAAAGTGCATGCGCTTTGGGACAGTGAGGAAAATAATGTTCACAAAGCCCATACACTTTCACCCTTTAGGAGAGTTG REF 1 178702456 - 178702554
TTCACAAAGCCCATACACTTTC MATURE 1 178702517 - 178702636 mmu-miR-350 -
___________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................AAGTGCATGCGCTTTGGGA......................................................... read_128999_8_6_2_2_2_0 OTHER 20 33.33 16 35.56 4 26.67 19
........................AAGTGCATGCGCTTTGGGAC........................................................ read_331215_1_4_1_0_2_1 OTHER 9 15.00 6 13.33 3 20.00 20
........................AAGTGCATGCGCTTTGGGACA....................................................... read_150484_5_1_0_1_2_0 OTHER 9 15.00 6 13.33 3 20.00 21
........................AAGTGCATGCGCTTTGGGAaa....................................................... read_102569_1_0_2_0_1_0 OTHER 4 6.67 3 6.67 1 6.67 aa 19
........................AAGTGCATGCGCTTTGGG.......................................................... read_182699_0_0_0_1_1_1 OTHER 3 5.00 0 0.00 3 20.00 18
........................AAGTGCATGCGCTTTGGGAa........................................................ read_187580_0_1_1_0_1_0 OTHER 3 5.00 2 4.44 1 6.67 a 19
........................AAGTGCATGCGCTTTGGGACAat..................................................... read_275845_0_1_1_0_0_0 OTHER 2 3.33 2 4.44 0 0.00 at 21
........................AAGTGCATGCGCTTTGGGACt....................................................... read_230418_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 t 20
........................AAGTGCATGCGCTTTGGGACAtt..................................................... read_277301_1_0_0_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 tt 21
........................AAGTGCATGCGCTTTGGGAag....................................................... read_360413_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 ag 19
........................AAGTGCATGCGCTTTGGtAC........................................................ read_223701_0_1_0_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 17T2
........................AAGTGCATGaGCTTTGGGACA....................................................... read_343238_1_0_0_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 9A11
........................AAGTGCATGCGCTTTGGGAt........................................................ read_377220_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 t 19
........................AAGTGCATGCGCTTTGGGAg........................................................ read_274866_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 g 19
........................AAGTGCATGCGCTTTGGGACAt...................................................... read_97613_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 t 21
........................AAGTGCATGCGCTTTGGGACAc...................................................... read_293230_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 c 21
........................AAGTGCATGCGCTTTcGGACA....................................................... read_158822_0_0_1_0_0_0 OTHER 1 1.67 1 2.22 0 0.00 15C5
---------- ---------- ----------
60 45 15
(75.00) (25.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 148 45 193 76.28%
OTHER 45 15 60 23.72%
---------- ---------- ----------
193 60 253
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