[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************
ID : mmu-mir-34c
DESCRIPTION : mmu-mir-34c MI0000403 Mus musculus miR-34c stem-loop
CHROMOSOME : 9
SPAN : 50911139 - 50911215
LENGTH : 77
SEQUENCE : AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT
OVERHANG THRESHOLD : 75%
**************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-34c
ACCID : MI0000403
PARENT : mmu-mir-34c
CHROMOSOME : 9
START : 50911139
STOP : 50911215
OFFSET : 13..35
SEQUENCE : AGGCAGTGTAGTTAGCTGATTGC
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-34c*
ACCID : MI0000403
PARENT : mmu-mir-34c
CHROMOSOME : 9
START : 50911139
STOP : 50911215
OFFSET : 46..67
SEQUENCE : AATCACTAACCACACAGCCAGG
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________________
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT REF 9 50911139 - 50911215
AGGCAGTGTAGTTAGCTGATTGC MATURE 9 50911152 - 50911250 mmu-miR-34c -
AATCACTAACCACACAGCCAGG MATURESTAR 9 50911185 - 50911282 mmu-miR-34c* -
_____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............GGCAGTGTAGTTAGCTGATTGC........................................... read_213187_56_76_54_44_55_66 MATURE 351 70.77 186 69.66 165 72.05 22
.............GGCAGTGTAGTTAGCTGATTG............................................ read_106114_7_10_7_7_4_3 MATURE 38 7.66 24 8.99 14 6.11 21
.............GGCAGTGTAGTTAGCTGATTGt........................................... read_2865_6_7_8_2_2_4 MATURE 29 5.85 21 7.87 8 3.49 t 21
.............GGCAGTGTAGTTAGCTGATTGa........................................... read_21409_3_5_1_4_1_2 MATURE 16 3.23 9 3.37 7 3.06 a 21
.............GGCAGTGTAGTTAGCTGATTtc........................................... read_202054_1_1_1_0_2_6 MATURE 11 2.22 3 1.12 8 3.49 tc 20
.............GGCAGTGTAGTTAGCTGATT............................................. read_287350_1_0_2_2_1_4 MATURE 10 2.02 3 1.12 7 3.06 20
.............GGCAGTGTAGTTAGCTGATTGCT.......................................... read_41852_2_1_3_0_2_1 MATURE 9 1.81 6 2.25 3 1.31 23
.............GGCAGTGTAGTTAGCTGATTGCa.......................................... read_265784_1_1_1_1_0_0 MATURE 4 0.81 3 1.12 1 0.44 a 22
.............GGCAGTGTAGTTAGaTGATTGC........................................... read_38562_2_0_1_0_0_0 MATURE 3 0.60 3 1.12 0 0.00 14A7
.............GGCAGTGTAGTTAGtTGATTGC........................................... read_401087_0_1_1_0_0_0 MATURE 2 0.40 2 0.75 0 0.00 14T7
.............GGCAGaGTAGTTAGCTGATTGC........................................... read_7234_1_0_0_0_1_0 MATURE 2 0.40 1 0.37 1 0.44 5A16
.............GGCAGTGTAGTTAGCTGATTac........................................... read_248753_1_0_0_0_1_0 MATURE 2 0.40 1 0.37 1 0.44 ac 20
.............GGCAGTGTAGTTAGCTGA............................................... read_106282_0_0_0_1_1_0 MATURE 2 0.40 0 0.00 2 0.87 18
.............GGCAGTGTAGTTAGCTG................................................ read_275025_0_0_0_0_0_2 MATURE 2 0.40 0 0.00 2 0.87 17
.............GGCAGTGTAGTTAGCTGATTt............................................ read_98514_0_1_0_0_0_0 MATURE 1 0.20 1 0.37 0 0.00 t 20
.............GGCAGTtTAGTTAGCTGATTGC........................................... read_96180_0_0_0_1_0_0 MATURE 1 0.20 0 0.00 1 0.44 6T15
.............GGCAGTGTAGTTAGCTGATTGg........................................... read_284402_0_0_0_1_0_0 MATURE 1 0.20 0 0.00 1 0.44 g 21
.............GGCAGTGTAGTTgGCTGATTGC........................................... read_275421_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.44 12G9
.............GGCAGTGTAGTTcGCTGATTGC........................................... read_373900_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.44 12C9
............AGGCAGTGTAGTTAGCTGATTG............................................ read_272024_0_0_0_0_1_0 MATURE 1 0.20 0 0.00 1 0.44 22
.............GGCAGTGTAGTTAcCTGATTGC........................................... read_790_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.44 13C8
.............GGCAGTGTAGTTAGCTGcTTGC........................................... read_355226_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.44 17C4
..............GCAGTGTAGTTAGCTGATTGC........................................... read_93660_0_1_0_0_0_0 MATURE 1 0.20 1 0.37 0 0.00 21
.............GGCAGgGTAGTTAGCTGATTGC........................................... read_268624_1_0_0_0_0_0 MATURE 1 0.20 1 0.37 0 0.00 5G16
.............GGCAGTGTAGTTAGCTtATTG............................................ read_44155_0_1_0_0_0_0 MATURE 1 0.20 1 0.37 0 0.00 16T4
.............GGCAGTGTAGcTAGCTGATTGC........................................... read_316845_0_1_0_0_0_0 MATURE 1 0.20 1 0.37 0 0.00 10C11
.............GGCAGTGcAGTTAGCTGATTGC........................................... read_96313_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.44 7C14
.............GGaAGTGTAGTTAGCTGATTGC........................................... read_184147_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.44 2A19
.............GGCAGTGTAGTTAtCTGATTGC........................................... read_19210_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.44 13T8
---------- ---------- ----------
496 267 229
(53.83) (46.17)
*** MATURESTAR ***
_____________________________________________________________________________
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT REF 9 50911139 - 50911215
AGGCAGTGTAGTTAGCTGATTGC MATURE 9 50911152 - 50911250 mmu-miR-34c -
AATCACTAACCACACAGCCAGG MATURESTAR 9 50911185 - 50911282 mmu-miR-34c* -
_____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................ATCACTAACCACACAGCCAGG........... read_353475_0_1_0_0_0_2 MATURESTAR 3 27.27 1 25.00 2 28.57 21
..............................................ATCACTAACCACACAGCCAG............ read_148015_0_1_0_2_0_0 MATURESTAR 3 27.27 1 25.00 2 28.57 20
..............................................ATCACTAACCACACAGCCAGGT.......... read_398417_0_0_0_0_2_0 MATURESTAR 2 18.18 0 0.00 2 28.57 22
..............................................ATCACTAACCACACAGCCAGGc.......... read_14210_1_0_0_0_0_0 MATURESTAR 1 9.09 1 25.00 0 0.00 c 21
..............................................ATCACTAACCACACAcCCAGG........... read_61757_0_0_0_0_1_0 MATURESTAR 1 9.09 0 0.00 1 14.29 15C5
..............................................ATCACTAACCACACcGCCAGG........... read_278044_1_0_0_0_0_0 MATURESTAR 1 9.09 1 25.00 0 0.00 14C6
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11 4 7
(36.36) (63.64)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 267 229 496 97.83%
MATURESTAR 4 7 11 2.17%
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271 236 507
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