[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************
ID                 : mmu-mir-34b
DESCRIPTION        : mmu-mir-34b MI0000404 Mus musculus miR-34b stem-loop
CHROMOSOME         : 9
SPAN               : 50911667 - 50911750
LENGTH             : 84
SEQUENCE           : GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC
OVERHANG THRESHOLD : 75%
*********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-34b-3p
ACCID      : MI0000404
PARENT     : mmu-mir-34b
CHROMOSOME : 9
START      : 50911667
STOP       : 50911750
OFFSET     : 51..72
SEQUENCE   : AATCACTAACTCCACTGCCATC
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-34b-5p
ACCID      : MI0000404
PARENT     : mmu-mir-34b
CHROMOSOME : 9
START      : 50911667
STOP       : 50911750
OFFSET     : 14..36
SEQUENCE   : AGGCAGTGTAATTAGCTGATTGT
STRAND     : -
******************************



*** MATURE-3P ***
____________________________________________________________________________________
GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC REF                  9                    50911667 - 50911750  
                                                  AATCACTAACTCCACTGCCATC             MATURE-3P            9                    50911718 - 50911822  mmu-miR-34b-3p       -                    
             AGGCAGTGTAATTAGCTGATTGT                                                 MATURE-5P            9                    50911681 - 50911786  mmu-miR-34b-5p       -                    
____________________________________________________________________________________

                                                                                -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................ATCACTAACTCCACTGCCATC.............       read_32477_1_1_2_3_6_3    MATURE-3P           16        72.73            4        66.67           12        75.00                        21   
...................................................ATCACTAACTCCACTGCCA...............      read_110231_0_0_1_0_0_1    MATURE-3P            2         9.09            1        16.67            1         6.25                        19   
...................................................ATCACTAACTCCACTGCC................      read_384781_0_0_0_0_0_1    MATURE-3P            1         4.55            0         0.00            1         6.25                        18   
...................................................ATCACTAACTCCACTGCCATCA............       read_43187_0_0_1_0_0_0    MATURE-3P            1         4.55            1        16.67            0         0.00                        22   
...................................................ATCACTAACTCCACTtCCATC.............      read_260592_0_0_0_0_1_0    MATURE-3P            1         4.55            0         0.00            1         6.25                      15T5   
...................................................ATCACTAACTCCACTGCCATt.............      read_340122_0_0_0_0_1_0    MATURE-3P            1         4.55            0         0.00            1         6.25            t           20   
                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                          22                         6                        16                                          
                                                                                                                                                               (27.27)                   (72.73)                                       




*** MATURE-5P ***
____________________________________________________________________________________
GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC REF                  9                    50911667 - 50911750  
                                                  AATCACTAACTCCACTGCCATC             MATURE-3P            9                    50911718 - 50911822  mmu-miR-34b-3p       -                    
             AGGCAGTGTAATTAGCTGATTGT                                                 MATURE-5P            9                    50911681 - 50911786  mmu-miR-34b-5p       -                    
____________________________________________________________________________________

                                                                                -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............GGCAGTGTAATTAGCTGATTGT.................................................   read_109546_9_8_9_13_22_19    MATURE-5P           80        72.73           26        65.00           54        77.14                        22   
.............AGGCAGTGTAATTAGCTGATTG..................................................       read_64424_2_1_0_1_3_1    MATURE-5P            8         7.27            3         7.50            5         7.14                        22   
..............GGCAGTGTAATTAGCTGATTG..................................................      read_290949_0_1_2_2_2_1    MATURE-5P            8         7.27            3         7.50            5         7.14                        21   
.............AGGCAGTGTAATTAGCTGATTGT.................................................      read_286753_0_0_0_1_0_2    MATURE-5P            3         2.73            0         0.00            3         4.29                        23   
..............GGCAGTGTAATTAGCTGATTGa.................................................       read_96976_1_0_0_1_0_0    MATURE-5P            2         1.82            1         2.50            1         1.43            a           21   
..............GGCAGTGTAATTAGCTGATTGc.................................................       read_42660_0_0_0_0_1_0    MATURE-5P            1         0.91            0         0.00            1         1.43            c           21   
..............GGCAGTGTAATTAGCTGATTtt.................................................      read_259644_0_0_1_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00           tt           20   
..............GGCAGTGTAATTAGCTtATTG..................................................      read_288727_0_1_0_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00                      16T4   
..............GGCAGTGTAATTAGCTGATTGTg................................................      read_345271_0_1_0_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00            g           22   
..............aGCAGTGcAATTAGCTGATTGT.................................................      read_234201_0_0_1_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00                      6C14   
.............AGGCAGTGTAATTAGCTGATa...................................................      read_130831_0_1_0_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00            a           20   
.............AGGCAGTGTAATTAGCTGAa....................................................       read_53860_0_1_0_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00            a           19   
..............GGCAGTGTAATTAGCTGATTGTA................................................      read_143287_0_1_0_0_0_0    MATURE-5P            1         0.91            1         2.50            0         0.00                        23   
..............GGCAGTGTAATTAGCTcATTGT.................................................      read_147275_0_0_0_0_0_1    MATURE-5P            1         0.91            0         0.00            1         1.43                      16C5   
                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                         110                        40                        70                                          
                                                                                                                                                               (36.36)                   (63.64)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               6              16              22          16.67%
      MATURE-5P              40              70             110          83.33%
                     ----------      ----------      ----------                
                             46              86             132                



[END]
