[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************
ID : mmu-mir-34b
DESCRIPTION : mmu-mir-34b MI0000404 Mus musculus miR-34b stem-loop
CHROMOSOME : 9
SPAN : 50911667 - 50911750
LENGTH : 84
SEQUENCE : GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC
OVERHANG THRESHOLD : 75%
*********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-34b-3p
ACCID : MI0000404
PARENT : mmu-mir-34b
CHROMOSOME : 9
START : 50911667
STOP : 50911750
OFFSET : 51..72
SEQUENCE : AATCACTAACTCCACTGCCATC
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-34b-5p
ACCID : MI0000404
PARENT : mmu-mir-34b
CHROMOSOME : 9
START : 50911667
STOP : 50911750
OFFSET : 14..36
SEQUENCE : AGGCAGTGTAATTAGCTGATTGT
STRAND : -
******************************
*** MATURE-3P ***
____________________________________________________________________________________
GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC REF 9 50911667 - 50911750
AATCACTAACTCCACTGCCATC MATURE-3P 9 50911718 - 50911822 mmu-miR-34b-3p -
AGGCAGTGTAATTAGCTGATTGT MATURE-5P 9 50911681 - 50911786 mmu-miR-34b-5p -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................ATCACTAACTCCACTGCCATC............. read_32477_1_1_2_3_6_3 MATURE-3P 16 72.73 4 66.67 12 75.00 21
...................................................ATCACTAACTCCACTGCCA............... read_110231_0_0_1_0_0_1 MATURE-3P 2 9.09 1 16.67 1 6.25 19
...................................................ATCACTAACTCCACTGCC................ read_384781_0_0_0_0_0_1 MATURE-3P 1 4.55 0 0.00 1 6.25 18
...................................................ATCACTAACTCCACTGCCATCA............ read_43187_0_0_1_0_0_0 MATURE-3P 1 4.55 1 16.67 0 0.00 22
...................................................ATCACTAACTCCACTtCCATC............. read_260592_0_0_0_0_1_0 MATURE-3P 1 4.55 0 0.00 1 6.25 15T5
...................................................ATCACTAACTCCACTGCCATt............. read_340122_0_0_0_0_1_0 MATURE-3P 1 4.55 0 0.00 1 6.25 t 20
---------- ---------- ----------
22 6 16
(27.27) (72.73)
*** MATURE-5P ***
____________________________________________________________________________________
GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC REF 9 50911667 - 50911750
AATCACTAACTCCACTGCCATC MATURE-3P 9 50911718 - 50911822 mmu-miR-34b-3p -
AGGCAGTGTAATTAGCTGATTGT MATURE-5P 9 50911681 - 50911786 mmu-miR-34b-5p -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............GGCAGTGTAATTAGCTGATTGT................................................. read_109546_9_8_9_13_22_19 MATURE-5P 80 72.73 26 65.00 54 77.14 22
.............AGGCAGTGTAATTAGCTGATTG.................................................. read_64424_2_1_0_1_3_1 MATURE-5P 8 7.27 3 7.50 5 7.14 22
..............GGCAGTGTAATTAGCTGATTG.................................................. read_290949_0_1_2_2_2_1 MATURE-5P 8 7.27 3 7.50 5 7.14 21
.............AGGCAGTGTAATTAGCTGATTGT................................................. read_286753_0_0_0_1_0_2 MATURE-5P 3 2.73 0 0.00 3 4.29 23
..............GGCAGTGTAATTAGCTGATTGa................................................. read_96976_1_0_0_1_0_0 MATURE-5P 2 1.82 1 2.50 1 1.43 a 21
..............GGCAGTGTAATTAGCTGATTGc................................................. read_42660_0_0_0_0_1_0 MATURE-5P 1 0.91 0 0.00 1 1.43 c 21
..............GGCAGTGTAATTAGCTGATTtt................................................. read_259644_0_0_1_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 tt 20
..............GGCAGTGTAATTAGCTtATTG.................................................. read_288727_0_1_0_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 16T4
..............GGCAGTGTAATTAGCTGATTGTg................................................ read_345271_0_1_0_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 g 22
..............aGCAGTGcAATTAGCTGATTGT................................................. read_234201_0_0_1_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 6C14
.............AGGCAGTGTAATTAGCTGATa................................................... read_130831_0_1_0_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 a 20
.............AGGCAGTGTAATTAGCTGAa.................................................... read_53860_0_1_0_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 a 19
..............GGCAGTGTAATTAGCTGATTGTA................................................ read_143287_0_1_0_0_0_0 MATURE-5P 1 0.91 1 2.50 0 0.00 23
..............GGCAGTGTAATTAGCTcATTGT................................................. read_147275_0_0_0_0_0_1 MATURE-5P 1 0.91 0 0.00 1 1.43 16C5
---------- ---------- ----------
110 40 70
(36.36) (63.64)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 6 16 22 16.67%
MATURE-5P 40 70 110 83.33%
---------- ---------- ----------
46 86 132
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