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REFERENCE HAIRPIN
***************************************************************************************************************************
ID                 : mmu-mir-34a
DESCRIPTION        : mmu-mir-34a MI0000584 Mus musculus miR-34a stem-loop
CHROMOSOME         : 4
SPAN               : 149442563 - 149442664
LENGTH             : 102
SEQUENCE           : CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT
OVERHANG THRESHOLD : 75%
***************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-34a
ACCID      : MI0000584
PARENT     : mmu-mir-34a
CHROMOSOME : 4
START      : 149442563
STOP       : 149442664
OFFSET     : 20..41
SEQUENCE   : TGGCAGTGTCTTAGCTGGTTGT
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________________________________________
CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT REF                  4                    149442563 - 149442664 
                   TGGCAGTGTCTTAGCTGGTTGT                                                              MATURE               4                    149442583 - 149442705 mmu-miR-34a          +                    
______________________________________________________________________________________________________

                                                                                                  -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....................GGCAGTGTCTTAGCTGGTTGT..............................................................   read_281481_9_9_8_5_7_8       MATURE           46        49.46           26        52.00           20        46.51                        21   
....................GGCAGTGTCTTAGCTGGTTGTT.............................................................   read_307594_4_2_3_2_3_2       MATURE           16        17.20            9        18.00            7        16.28                        22   
....................GGCAGTGTCTTAGCTGGTTG...............................................................    read_20032_0_2_1_0_1_1       MATURE            5         5.38            3         6.00            2         4.65                        20   
....................GGCAGTGTCTTAGCTGGTTGTTt............................................................   read_228692_1_1_0_0_2_0       MATURE            4         4.30            2         4.00            2         4.65            t           22   
....................GGCAGTGTCTTAGCTGGTTGTat............................................................   read_168070_1_0_1_0_0_1       MATURE            3         3.23            2         4.00            1         2.33           at           21   
....................GGCAGTGTCTTAGCTGGTTtt..............................................................     read_7113_1_0_0_0_1_1       MATURE            3         3.23            1         2.00            2         4.65           tt           19   
....................GGCAGTGTCTTAGCTGGTT................................................................   read_148639_1_0_0_0_1_1       MATURE            3         3.23            1         2.00            2         4.65                        19   
....................GGCAGTGTCTTAGCTGGTTGTTaa...........................................................   read_399228_0_0_1_0_0_0       MATURE            1         1.08            1         2.00            0         0.00           aa           22   
....................GGCAGTGTCTTAGCTGGTTGTa.............................................................   read_313775_0_1_0_0_0_0       MATURE            1         1.08            1         2.00            0         0.00            a           21   
....................GGCAGTGTCTTAGCTGtTTGTat............................................................   read_209716_0_0_0_0_0_1       MATURE            1         1.08            0         0.00            1         2.33           at         16T4   
....................GGCAGTGTCTTAGaTGGTTGTT.............................................................    read_97955_0_0_0_0_0_1       MATURE            1         1.08            0         0.00            1         2.33                      13A8   
....................GGCAGTGTCTTAGCTGGTTGTTtt...........................................................    read_10691_0_0_0_0_1_0       MATURE            1         1.08            0         0.00            1         2.33           tt           22   
....................GGCAGTGTCTTAGCTGGTTGa..............................................................    read_94971_0_1_0_0_0_0       MATURE            1         1.08            1         2.00            0         0.00            a           20   
....................GGCAGTGTCTTAGCTGGTTGaa.............................................................    read_61537_0_0_1_0_0_0       MATURE            1         1.08            1         2.00            0         0.00           aa           20   
....................GGCAGTGTCTTAGCTGGTTGc..............................................................   read_209762_0_0_0_1_0_0       MATURE            1         1.08            0         0.00            1         2.33            c           20   
....................GGCAGTGTCTTAGCTGGTTGTTG............................................................    read_60243_0_0_1_0_0_0       MATURE            1         1.08            1         2.00            0         0.00                        23   
....................GGCAGTGTCTTAGCTGGTTtTT.............................................................   read_231680_0_1_0_0_0_0       MATURE            1         1.08            1         2.00            0         0.00                      19T2   
....................GGCAGTGTCTTAGCTtGTTGTa.............................................................   read_185711_0_0_0_0_1_0       MATURE            1         1.08            0         0.00            1         2.33            a         15T5   
.......................AGTGTCTTAGCTGGTTGT..............................................................     read_7869_0_0_0_0_0_1       MATURE            1         1.08            0         0.00            1         2.33                        18   
....................GGaAGTGTCTTAGCTGGTTG...............................................................   read_141386_0_0_0_0_1_0       MATURE            1         1.08            0         0.00            1         2.33                      2A17   
                                                                                                                                                 ----------                ----------                ----------   
                                                                                                                                                         93                        50                        43                                          
                                                                                                                                                                              (53.76)                   (46.24)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              50              43              93         100.00%
                     ----------      ----------      ----------                
                             50              43              93                



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