[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************************
ID : mmu-mir-34a
DESCRIPTION : mmu-mir-34a MI0000584 Mus musculus miR-34a stem-loop
CHROMOSOME : 4
SPAN : 149442563 - 149442664
LENGTH : 102
SEQUENCE : CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT
OVERHANG THRESHOLD : 75%
***************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-34a
ACCID : MI0000584
PARENT : mmu-mir-34a
CHROMOSOME : 4
START : 149442563
STOP : 149442664
OFFSET : 20..41
SEQUENCE : TGGCAGTGTCTTAGCTGGTTGT
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________________________
CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT REF 4 149442563 - 149442664
TGGCAGTGTCTTAGCTGGTTGT MATURE 4 149442583 - 149442705 mmu-miR-34a +
______________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................GGCAGTGTCTTAGCTGGTTGT.............................................................. read_281481_9_9_8_5_7_8 MATURE 46 49.46 26 52.00 20 46.51 21
....................GGCAGTGTCTTAGCTGGTTGTT............................................................. read_307594_4_2_3_2_3_2 MATURE 16 17.20 9 18.00 7 16.28 22
....................GGCAGTGTCTTAGCTGGTTG............................................................... read_20032_0_2_1_0_1_1 MATURE 5 5.38 3 6.00 2 4.65 20
....................GGCAGTGTCTTAGCTGGTTGTTt............................................................ read_228692_1_1_0_0_2_0 MATURE 4 4.30 2 4.00 2 4.65 t 22
....................GGCAGTGTCTTAGCTGGTTGTat............................................................ read_168070_1_0_1_0_0_1 MATURE 3 3.23 2 4.00 1 2.33 at 21
....................GGCAGTGTCTTAGCTGGTTtt.............................................................. read_7113_1_0_0_0_1_1 MATURE 3 3.23 1 2.00 2 4.65 tt 19
....................GGCAGTGTCTTAGCTGGTT................................................................ read_148639_1_0_0_0_1_1 MATURE 3 3.23 1 2.00 2 4.65 19
....................GGCAGTGTCTTAGCTGGTTGTTaa........................................................... read_399228_0_0_1_0_0_0 MATURE 1 1.08 1 2.00 0 0.00 aa 22
....................GGCAGTGTCTTAGCTGGTTGTa............................................................. read_313775_0_1_0_0_0_0 MATURE 1 1.08 1 2.00 0 0.00 a 21
....................GGCAGTGTCTTAGCTGtTTGTat............................................................ read_209716_0_0_0_0_0_1 MATURE 1 1.08 0 0.00 1 2.33 at 16T4
....................GGCAGTGTCTTAGaTGGTTGTT............................................................. read_97955_0_0_0_0_0_1 MATURE 1 1.08 0 0.00 1 2.33 13A8
....................GGCAGTGTCTTAGCTGGTTGTTtt........................................................... read_10691_0_0_0_0_1_0 MATURE 1 1.08 0 0.00 1 2.33 tt 22
....................GGCAGTGTCTTAGCTGGTTGa.............................................................. read_94971_0_1_0_0_0_0 MATURE 1 1.08 1 2.00 0 0.00 a 20
....................GGCAGTGTCTTAGCTGGTTGaa............................................................. read_61537_0_0_1_0_0_0 MATURE 1 1.08 1 2.00 0 0.00 aa 20
....................GGCAGTGTCTTAGCTGGTTGc.............................................................. read_209762_0_0_0_1_0_0 MATURE 1 1.08 0 0.00 1 2.33 c 20
....................GGCAGTGTCTTAGCTGGTTGTTG............................................................ read_60243_0_0_1_0_0_0 MATURE 1 1.08 1 2.00 0 0.00 23
....................GGCAGTGTCTTAGCTGGTTtTT............................................................. read_231680_0_1_0_0_0_0 MATURE 1 1.08 1 2.00 0 0.00 19T2
....................GGCAGTGTCTTAGCTtGTTGTa............................................................. read_185711_0_0_0_0_1_0 MATURE 1 1.08 0 0.00 1 2.33 a 15T5
.......................AGTGTCTTAGCTGGTTGT.............................................................. read_7869_0_0_0_0_0_1 MATURE 1 1.08 0 0.00 1 2.33 18
....................GGaAGTGTCTTAGCTGGTTG............................................................... read_141386_0_0_0_0_1_0 MATURE 1 1.08 0 0.00 1 2.33 2A17
---------- ---------- ----------
93 50 43
(53.76) (46.24)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 50 43 93 100.00%
---------- ---------- ----------
50 43 93
[END]