[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************
ID : mmu-mir-345
DESCRIPTION : mmu-mir-345 MI0000632 Mus musculus miR-345 stem-loop
CHROMOSOME : 12
SPAN : 110075183 - 110075278
LENGTH : 96
SEQUENCE : ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-345-3p
ACCID : MI0000632
PARENT : mmu-mir-345
CHROMOSOME : 12
START : 110075183
STOP : 110075278
OFFSET : 55..76
SEQUENCE : CCTGAACTAGGGGTCTGGAGAC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-345-5p
ACCID : MI0000632
PARENT : mmu-mir-345
CHROMOSOME : 12
START : 110075183
STOP : 110075278
OFFSET : 17..38
SEQUENCE : GCTGACCCCTAGTCCAGTGCTT
STRAND : +
******************************
*** MATURE-3P ***
________________________________________________________________________________________________
ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG REF 12 110075183 - 110075278
CCTGAACTAGGGGTCTGGAGAC MATURE-3P 12 110075238 - 110075354 mmu-miR-345-3p +
GCTGACCCCTAGTCCAGTGCTT MATURE-5P 12 110075200 - 110075316 mmu-miR-345-5p +
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................................................CTGAACTAGGGGTCTGGAGt...................... read_89792_0_1_0_0_0_1 MATURE-3P 2 28.57 1 33.33 1 25.00 t 19
......................................................CCTGAACTAGGGGTCTGGAG....................... read_317253_0_0_0_2_0_0 MATURE-3P 2 28.57 0 0.00 2 50.00 20
......................................................CCTGAACTAGGGGTCTGGAGtt..................... read_127377_1_0_0_0_0_0 MATURE-3P 1 14.29 1 33.33 0 0.00 tt 20
.........................................................GAACTAGGGGTCTGGAGAttt................... read_179521_0_0_0_0_1_0 MATURE-3P 1 14.29 0 0.00 1 25.00 ttt 18
......................................................CCTGAACTAGGGGTCTGGcg....................... read_348810_0_1_0_0_0_0 MATURE-3P 1 14.29 1 33.33 0 0.00 cg 18
---------- ---------- ----------
7 3 4
(42.86) (57.14)
*** MATURE-5P ***
________________________________________________________________________________________________
ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG REF 12 110075183 - 110075278
CCTGAACTAGGGGTCTGGAGAC MATURE-3P 12 110075238 - 110075354 mmu-miR-345-3p +
GCTGACCCCTAGTCCAGTGCTT MATURE-5P 12 110075200 - 110075316 mmu-miR-345-5p +
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................GCTGACCCCTAGTCCAGTGCT............................................................ read_80245_14_9_5_7_9_5 MATURE-5P 49 37.98 28 38.36 21 37.50 21
.................CTGACCCCTAGTCCAGTGCT............................................................ read_128175_2_4_1_6_4_1 MATURE-5P 18 13.95 7 9.59 11 19.64 20
................GCTGACCCCTAGTCCAGTGCTT........................................................... read_175451_4_6_2_1_1_0 MATURE-5P 14 10.85 12 16.44 2 3.57 22
................GCTGACCCCTAGTCCAGT............................................................... read_198181_0_0_1_3_4_2 MATURE-5P 10 7.75 1 1.37 9 16.07 18
................GCTGACCCCTAGTCCAGTGt............................................................. read_286006_1_1_2_0_2_2 MATURE-5P 8 6.20 4 5.48 4 7.14 t 19
.................CTGACCCCTAGTCCAGTGCTT........................................................... read_224569_2_1_1_0_0_1 MATURE-5P 5 3.88 4 5.48 1 1.79 21
................GCTGACCCCTAGTCCAGTGCTat.......................................................... read_246049_0_2_1_0_0_0 MATURE-5P 3 2.33 3 4.11 0 0.00 at 21
................GCTGACCCCTAGTCCAGTGCat........................................................... read_316051_0_0_1_0_0_1 MATURE-5P 2 1.55 1 1.37 1 1.79 at 20
................GCTGACCCCTAGTCCAGTGC............................................................. read_261411_0_1_1_0_0_0 MATURE-5P 2 1.55 2 2.74 0 0.00 20
................GCTGACCCCTAGTCCAGTGCTa........................................................... read_132528_1_1_0_0_0_0 MATURE-5P 2 1.55 2 2.74 0 0.00 a 21
................GCTGACCCCTAGTCCAGTGCTag.......................................................... read_32741_0_1_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 ag 21
................GCTGACCCCTAGTCCAGTtCTT........................................................... read_412172_0_1_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 18T3
...................GACCCCTAGTCCAGTGCTTGT......................................................... read_40469_1_0_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 21
................GCTGACCCCTAGTCCAGTGCTaaa......................................................... read_102233_0_0_1_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 aaa 21
................GCTGACCCCTAGTCCAGTt.............................................................. read_405904_0_0_0_0_1_0 MATURE-5P 1 0.78 0 0.00 1 1.79 t 18
................GCTGACCCCTAGTCCAGTGCc............................................................ read_400693_0_0_1_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 c 20
................GCTGACCCCTAGTCCAGTGaa............................................................ read_389673_0_0_0_0_1_0 MATURE-5P 1 0.78 0 0.00 1 1.79 aa 19
................GCcGACCCCTAGTCCAGTGCTa........................................................... read_195782_0_0_0_0_1_0 MATURE-5P 1 0.78 0 0.00 1 1.79 a 2C18
....................ACCCCTAGTCCAGTGCTT........................................................... read_336813_0_0_0_1_0_0 MATURE-5P 1 0.78 0 0.00 1 1.79 18
.................CTGACCCCTAGTCCAGTGt............................................................. read_43665_1_0_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 t 18
................GCTGACCCCTAGTCCAGTGa............................................................. read_169566_1_0_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 a 19
................GCTGACCCCTAGTCCAGTG.............................................................. read_52002_0_0_0_0_1_0 MATURE-5P 1 0.78 0 0.00 1 1.79 19
................GCTGACCCCTAtTCCAGTGCT............................................................ read_392603_0_0_0_1_0_0 MATURE-5P 1 0.78 0 0.00 1 1.79 11T9
.................CTGACCCCTAGTCCAGT............................................................... read_395936_0_0_0_1_0_0 MATURE-5P 1 0.78 0 0.00 1 1.79 17
................GCTGACCCCTAGTCCAGTGCTTt.......................................................... read_294386_1_0_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 t 22
...................GACCCCTAGTCCAGTGCTTG.......................................................... read_141416_1_0_0_0_0_0 MATURE-5P 1 0.78 1 1.37 0 0.00 20
---------- ---------- ----------
129 73 56
(56.59) (43.41)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 3 4 7 5.15%
MATURE-5P 73 56 129 94.85%
---------- ---------- ----------
76 60 136
[END]