[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-340
DESCRIPTION : mmu-mir-340 MI0000623 Mus musculus miR-340 stem-loop
CHROMOSOME : 11
SPAN : 49883204 - 49883301
LENGTH : 98
SEQUENCE : CAATTGTACTTGGTGTGATTATAAAGCAATGAGACTGATTGTCATATGTCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCCATACCTGGTATCTTA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-340-3p
ACCID : MI0000623
PARENT : mmu-mir-340
CHROMOSOME : 11
START : 49883204
STOP : 49883301
OFFSET : 61..82
SEQUENCE : TCCGTCTCAGTTACTTTATAGC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-340-5p
ACCID : MI0000623
PARENT : mmu-mir-340
CHROMOSOME : 11
START : 49883204
STOP : 49883301
OFFSET : 19..40
SEQUENCE : TTATAAAGCAATGAGACTGATT
STRAND : +
******************************
*** MATURE-3P ***
__________________________________________________________________________________________________
CAATTGTACTTGGTGTGATTATAAAGCAATGAGACTGATTGTCATATGTCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCCATACCTGGTATCTTA REF 11 49883204 - 49883301
TCCGTCTCAGTTACTTTATAGC MATURE-3P 11 49883265 - 49883383 mmu-miR-340-3p +
TTATAAAGCAATGAGACTGATT MATURE-5P 11 49883223 - 49883341 mmu-miR-340-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................CCGTCTCAGTTACTTTATAGC................. read_330140_12_8_9_4_3_3 MATURE-3P 39 31.71 29 34.12 10 26.32 21
.............................................................CCGTCTCAGTTACTTTATAGCC................ read_34219_3_7_6_4_7_6 MATURE-3P 33 26.83 16 18.82 17 44.74 22
.............................................................CCGTCTCAGTTACTTTATAG.................. read_189762_2_4_4_2_2_1 MATURE-3P 15 12.20 10 11.76 5 13.16 20
.............................................................CCGTCTCAGTTACTTTAT.................... read_84658_2_2_1_0_0_0 MATURE-3P 5 4.07 5 5.88 0 0.00 18
.............................................................CCGTCTCAGTTACTTTATAGCt................ read_364872_2_1_0_1_0_0 MATURE-3P 4 3.25 3 3.53 1 2.63 t 21
.............................................................CCGTCTCAGTTACTTTATA................... read_204505_0_1_1_0_2_0 MATURE-3P 4 3.25 2 2.35 2 5.26 19
.............................................................CCGTCTCAGTTACTTTATAtCC................ read_152648_0_2_1_0_1_0 MATURE-3P 4 3.25 3 3.53 1 2.63 19T2
.............................................................CCGTCTCAGTTACTTTATAGCCt............... read_210737_0_0_2_0_0_0 MATURE-3P 2 1.63 2 2.35 0 0.00 t 22
..............................................................CGTCTCAGTTACTTTATAGCC................ read_180664_0_2_0_0_0_0 MATURE-3P 2 1.63 2 2.35 0 0.00 21
.............................................................CCGTCTCAGTTACTaTATAGC................. read_394532_2_0_0_0_0_0 MATURE-3P 2 1.63 2 2.35 0 0.00 14A6
.............................................................CCGTCTCAGTTACTTTATAGCa................ read_124542_1_1_0_0_0_0 MATURE-3P 2 1.63 2 2.35 0 0.00 a 21
.............................................................CCGTCTCAGaTACTTTATAGCC................ read_312157_1_0_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 9A12
..............................................................CGTCTCAGTTACTTTATAtCCA............... read_182719_0_0_0_1_0_0 MATURE-3P 1 0.81 0 0.00 1 2.63 18T3
.............................................................CCGTCTCAGTTACTTTATAtc................. read_91435_0_0_1_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 tc 19
.............................................................CCGcCTCAGTTACTTTATAGC................. read_114444_0_1_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 3C17
.............................................................CCGTCTCAGTTACTaTATAGCC................ read_93617_1_0_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 14A7
.............................................................CCGTCTCAGTTACTaTATAG.................. read_205625_1_0_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 14A5
.............................................................CCGTCTCAGTTACTTTATAac................. read_158398_0_0_0_0_1_0 MATURE-3P 1 0.81 0 0.00 1 2.63 ac 19
...............................................................GTCTCAGTTACTTTATAGCC................ read_167233_0_1_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 20
.............................................................CCGTCTCAGTTACTTTATAtt................. read_396652_0_0_1_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 tt 19
.............................................................CCGTCTCgGTTACTTTATAGC................. read_230987_0_1_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 7G13
.............................................................CCGTCTCAGTTACTTTATAGaa................ read_151186_1_0_0_0_0_0 MATURE-3P 1 0.81 1 1.18 0 0.00 aa 20
---------- ---------- ----------
123 85 38
(69.11) (30.89)
*** MATURE-5P ***
__________________________________________________________________________________________________
CAATTGTACTTGGTGTGATTATAAAGCAATGAGACTGATTGTCATATGTCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCCATACCTGGTATCTTA REF 11 49883204 - 49883301
TCCGTCTCAGTTACTTTATAGC MATURE-3P 11 49883265 - 49883383 mmu-miR-340-3p +
TTATAAAGCAATGAGACTGATT MATURE-5P 11 49883223 - 49883341 mmu-miR-340-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................TATAAAGCAATGAGACTGATT........................................................... read_272317_201_289_264_74_78_125 MATURE-5P 1031 64.92 754 66.96 277 59.96 21
...................TATAAAGCAATGAGACTGAT............................................................ read_363677_41_55_46_22_24_45 MATURE-5P 233 14.67 142 12.61 91 19.70 20
...................TATAAAGCAATGAGACTGA............................................................. read_378909_22_22_22_12_13_10 MATURE-5P 101 6.36 66 5.86 35 7.58 19
...................TATAAAGCAATGAGACTGATa........................................................... read_168548_8_6_15_2_3_7 MATURE-5P 41 2.58 29 2.58 12 2.60 a 20
...................TATAAAGCAATGAGACTGATTt.......................................................... read_166099_4_5_4_2_2_4 MATURE-5P 21 1.32 13 1.15 8 1.73 t 21
...................TATAAAGCAATGAGACTGATTa.......................................................... read_217191_4_2_5_1_1_3 MATURE-5P 16 1.01 11 0.98 5 1.08 a 21
...................TATAAAGCAATGAGACTG.............................................................. read_117306_2_5_2_0_0_3 MATURE-5P 12 0.76 9 0.80 3 0.65 18
...................TATAAAGCAATGAGcCTGATT........................................................... read_304164_4_1_1_1_0_1 MATURE-5P 8 0.50 6 0.53 2 0.43 14C6
...................TATAAAGCAATGAGACT............................................................... read_365120_0_0_0_1_2_4 MATURE-5P 7 0.44 0 0.00 7 1.52 17
...................TATAAAGCAATGAGACTGATaa.......................................................... read_110743_2_1_2_1_0_1 MATURE-5P 7 0.44 5 0.44 2 0.43 aa 20
...................TATAAAGCAATGAGAtTGATT........................................................... read_33564_0_2_4_0_0_0 MATURE-5P 6 0.38 6 0.53 0 0.00 15T5
...................TATAAAGCAATGAGACTGtTT........................................................... read_399005_0_2_3_0_0_0 MATURE-5P 5 0.31 5 0.44 0 0.00 18T2
...................TATAAAGCAATGAGACTGATat.......................................................... read_209647_2_1_1_0_1_0 MATURE-5P 5 0.31 4 0.36 1 0.22 at 20
...................TATAAAGCAATGAGgCTGATT........................................................... read_231402_1_1_2_0_0_0 MATURE-5P 4 0.25 4 0.36 0 0.00 14G6
...................TATAAAGCAATGAGACTGAa............................................................ read_286518_2_1_0_0_0_1 MATURE-5P 4 0.25 3 0.27 1 0.22 a 19
...................TATAAAGCAATGAGACTGAaa........................................................... read_392806_1_2_0_1_0_0 MATURE-5P 4 0.25 3 0.27 1 0.22 aa 19
...................TATAAAGCAATGAGtCTGATT........................................................... read_40128_2_2_0_0_0_0 MATURE-5P 4 0.25 4 0.36 0 0.00 14T6
...................TATAAAGCAATGtGACTGATT........................................................... read_352488_0_0_2_0_1_0 MATURE-5P 3 0.19 2 0.18 1 0.22 12T8
...................TATAAAGCAATGAGACTcATT........................................................... read_100718_2_0_1_0_0_0 MATURE-5P 3 0.19 3 0.27 0 0.00 17C3
...................TATAAAGCAATGAGACTGcTT........................................................... read_130462_2_0_0_1_0_0 MATURE-5P 3 0.19 2 0.18 1 0.22 18C2
...................TATAAAGCAATGAGACTGATg........................................................... read_145402_1_2_0_0_0_0 MATURE-5P 3 0.19 3 0.27 0 0.00 g 20
...................TATAAAGCAATGAtACTGATT........................................................... read_293476_0_2_0_0_0_1 MATURE-5P 3 0.19 2 0.18 1 0.22 13T7
...................TATAAAGCAATGAGACTGt............................................................. read_102186_1_0_2_0_0_0 MATURE-5P 3 0.19 3 0.27 0 0.00 t 18
...................TATAAAGCAATGAGACTGATTG.......................................................... read_70045_0_0_3_0_0_0 MATURE-5P 3 0.19 3 0.27 0 0.00 22
...................TATAAAGCAATGAGACTGATTat......................................................... read_306072_0_1_0_0_1_1 MATURE-5P 3 0.19 1 0.09 2 0.43 at 21
...................TATAAAGCAATtAGACTGATT........................................................... read_389397_0_1_0_0_1_0 MATURE-5P 2 0.13 1 0.09 1 0.22 11T9
...................TATAAAGCAATGAGACTGAat........................................................... read_359598_0_2_0_0_0_0 MATURE-5P 2 0.13 2 0.18 0 0.00 at 19
...................TATAAAcCAATGAGACTGATT........................................................... read_138238_0_0_2_0_0_0 MATURE-5P 2 0.13 2 0.18 0 0.00 6C14
...................TATAAAGCAATGAGACTGtt............................................................ read_378125_0_0_2_0_0_0 MATURE-5P 2 0.13 2 0.18 0 0.00 tt 18
...................TATAAAGCAATGAGACTGATTtt......................................................... read_387757_1_0_0_0_1_0 MATURE-5P 2 0.13 1 0.09 1 0.22 tt 21
...................TATAAAGCAgTGAGACTGATT........................................................... read_33637_0_0_1_0_0_1 MATURE-5P 2 0.13 1 0.09 1 0.22 9G11
...................TATAAAGCAATGAaACTGATT........................................................... read_6299_1_1_0_0_0_0 MATURE-5P 2 0.13 2 0.18 0 0.00 13A7
.....................TAAAGCAATGAGACTGATT........................................................... read_121530_0_0_1_0_0_1 MATURE-5P 2 0.13 1 0.09 1 0.22 19
...................TAcAAAGCAATGAGACTGATT........................................................... read_347493_1_1_0_0_0_0 MATURE-5P 2 0.13 2 0.18 0 0.00 2C18
...................TAaAAAGCAATGAGACTGATT........................................................... read_266988_0_1_1_0_0_0 MATURE-5P 2 0.13 2 0.18 0 0.00 2A18
...................TATAAAGCAATGAGAaTGATT........................................................... read_390049_0_0_1_0_0_1 MATURE-5P 2 0.13 1 0.09 1 0.22 15A5
...................TATAtAGCAATGAGACTGATT........................................................... read_8147_0_0_0_0_0_1 MATURE-5P 1 0.06 0 0.00 1 0.22 4T16
...................TATAAAGCAATGcGACTGATT........................................................... read_265054_0_0_0_0_0_1 MATURE-5P 1 0.06 0 0.00 1 0.22 12C8
...................TATAAAGCgATGAGACTGATT........................................................... read_94841_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 8G12
...................TATAAAGaAATGAGACTGAT............................................................ read_235919_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 7A12
...................TATAAAGCAATGAGAtTGAT............................................................ read_342491_1_0_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 15T4
...................TATAAAGCtATGAGACTGATT........................................................... read_333253_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 8T12
...................TATAAAaCAATGAGACTGATT........................................................... read_398191_1_0_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 6A14
...................TATAAgGCAATGAGACTGATT........................................................... read_161570_1_0_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 5G15
...................TATAAAGCAgTGAGACTGATTa.......................................................... read_341592_0_0_0_0_1_0 MATURE-5P 1 0.06 0 0.00 1 0.22 a 9G11
...................TATAAAGCAATGAGACTGATTag......................................................... read_216920_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 ag 21
...................TATAAAGCAATGAGACTGc............................................................. read_390839_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 c 18
...................TATAAAGCAATGAGACTGATTaaa........................................................ read_191957_0_1_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 aaa 21
...................TATAAAGCAATGAGACTGATatt......................................................... read_63779_1_0_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 att 20
...................TATAAAGCAATGAGACTGATTta......................................................... read_273259_0_1_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 ta 21
...................TATAAAGCAATGAGACTGAag........................................................... read_254449_1_0_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 ag 19
....................ATAAAGCAATGAGACTGA............................................................. read_82768_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 18
...................cATAAAGCAATGAGACTGATT........................................................... read_259056_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 20
...................TATAAAGCAATGAGACTGATc........................................................... read_277633_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 c 20
...................TATAAAGCAATaAGACTGAT............................................................ read_181546_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 11A8
...................TATAAAGCAATGAGACTGAagt.......................................................... read_381727_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 agt 19
...................TATAAAGCAATGAGACTGtTTG.......................................................... read_86135_0_0_0_0_1_0 MATURE-5P 1 0.06 0 0.00 1 0.22 18T3
...................TATgAAGCAATGAGACTGATT........................................................... read_42506_1_0_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 3G17
...................TATAAAGCAATGAGACTGATaaa......................................................... read_2454_0_0_0_0_1_0 MATURE-5P 1 0.06 0 0.00 1 0.22 aaa 20
...................TATAAAGCAATGAGACTGATggc......................................................... read_353495_0_0_0_0_0_1 MATURE-5P 1 0.06 0 0.00 1 0.22 ggc 20
...................TATAAAGCAATGAGACTGATTaa......................................................... read_119225_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 aa 21
...................TATAAAGCAATGAGACTGATTGT......................................................... read_86865_0_1_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 23
...................TATAAAGCAATGAcACTGATT........................................................... read_374098_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 13C7
...................TATAAAGCAATGAGACTGATgt.......................................................... read_250761_0_1_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 gt 20
...................TATAAAGCAATGAGACTGAgt........................................................... read_353321_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 gt 19
...................TATAAAGCAATGAGtCTGAT............................................................ read_209479_0_0_0_0_0_1 MATURE-5P 1 0.06 0 0.00 1 0.22 14T5
...................TATAAAGCAATGAGACTGATTc.......................................................... read_143521_0_0_1_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 c 21
...................TATAAAGCAATGAGACTGATgaa......................................................... read_87242_0_1_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 gaa 20
...................TATAAAGCAATGAGACTGg............................................................. read_162512_0_1_0_0_0_0 MATURE-5P 1 0.06 1 0.09 0 0.00 g 18
---------- ---------- ----------
1588 1126 462
(70.91) (29.09)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 85 38 123 7.19%
MATURE-5P 1126 462 1588 92.81%
---------- ---------- ----------
1211 500 1711
[END]