[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************
ID : mmu-mir-339
DESCRIPTION : mmu-mir-339 MI0000621 Mus musculus miR-339 stem-loop
CHROMOSOME : 5
SPAN : 139845604 - 139845699
LENGTH : 96
SEQUENCE : ACGGGGTGGCCACTATCCCTGTCCTCCAGGAGCTCACGTATGCCTGCCTGTGAGCGCCTCGGCGACAGAGCCGGTGTCCACCCCTGCACTGTCCAC
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-339-3p
ACCID : MI0000621
PARENT : mmu-mir-339
CHROMOSOME : 5
START : 139845604
STOP : 139845699
OFFSET : 51..73
SEQUENCE : TGAGCGCCTCGGCGACAGAGCCG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-339-5p
ACCID : MI0000621
PARENT : mmu-mir-339
CHROMOSOME : 5
START : 139845604
STOP : 139845699
OFFSET : 16..38
SEQUENCE : TCCCTGTCCTCCAGGAGCTCACG
STRAND : -
******************************
*** MATURE-3P ***
________________________________________________________________________________________________
ACGGGGTGGCCACTATCCCTGTCCTCCAGGAGCTCACGTATGCCTGCCTGTGAGCGCCTCGGCGACAGAGCCGGTGTCCACCCCTGCACTGTCCAC REF 5 139845604 - 139845699
TGAGCGCCTCGGCGACAGAGCCG MATURE-3P 5 139845655 - 139845772 mmu-miR-339-3p -
TCCCTGTCCTCCAGGAGCTCACG MATURE-5P 5 139845620 - 139845737 mmu-miR-339-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................GAGCGCCTCGGCGACAGAGC.......................... read_94447_4_3_2_2_3_1 MATURE-3P 15 21.43 9 18.37 6 28.57 20
.....................................................GCGCCTCGGCGACAGAGCCG........................ read_173435_4_3_2_0_1_0 MATURE-3P 10 14.29 9 18.37 1 4.76 20
...................................................GAGCGCCTCGGCGACAGAGCC......................... read_181027_1_2_3_2_0_0 MATURE-3P 8 11.43 6 12.24 2 9.52 21
...................................................GAGCGCCTCGGCGACAGAG........................... read_67605_0_3_1_1_1_2 MATURE-3P 8 11.43 4 8.16 4 19.05 19
...................................................GAGCGCCTCGGCGACAGAGCCG........................ read_44111_2_2_1_0_1_1 MATURE-3P 7 10.00 5 10.20 2 9.52 22
.....................................................GCGCCTCGGCGACAGAGCCGt....................... read_273612_1_2_0_0_0_2 MATURE-3P 5 7.14 3 6.12 2 9.52 t 20
...................................................GAGCGCCTCGGCGACAGAGCt......................... read_150002_1_2_0_0_0_0 MATURE-3P 3 4.29 3 6.12 0 0.00 t 20
.....................................................GCGCCTCGGCGACAGAGCCGtt...................... read_310804_0_1_1_0_0_0 MATURE-3P 2 2.86 2 4.08 0 0.00 tt 20
...................................................GAGCGCCTCGGCGACAGAGCCt........................ read_157270_1_0_0_1_0_0 MATURE-3P 2 2.86 1 2.04 1 4.76 t 21
...................................................GAGCGCCTCGGCGACAGAGCCGc....................... read_41736_1_0_0_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 c 22
.....................................................GCGCCTCGGCGACAGAGCtgt....................... read_410838_0_0_0_0_1_0 MATURE-3P 1 1.43 0 0.00 1 4.76 tgt 18
.....................................................GCGCCTCGGCGACAGgGCCG........................ read_205884_0_0_1_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 15G4
....................................................AGCGCCTCGGCGACAGAGCt......................... read_352783_0_0_0_0_0_1 MATURE-3P 1 1.43 0 0.00 1 4.76 t 19
.....................................................GCGCCTCGGCGACAGAGCCGta...................... read_142619_0_1_0_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 ta 20
...................................................GAGCGCCTCGGCGACAGAGt.......................... read_50617_1_0_0_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 t 19
.....................................................GCGCCTCGGCGACAGAGC.......................... read_183682_0_0_0_0_1_0 MATURE-3P 1 1.43 0 0.00 1 4.76 18
.....................................................GCGCCTCGGCGACAGAGCC......................... read_347584_0_0_1_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 19
...................................................GAGCGCCTCGGCGACAGAGCtt........................ read_85643_0_0_1_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 tt 20
...................................................GAGCGCCTCGGCGACAGAGCCGt....................... read_405039_1_0_0_0_0_0 MATURE-3P 1 1.43 1 2.04 0 0.00 t 22
---------- ---------- ----------
70 49 21
(70.00) (30.00)
*** MATURE-5P ***
________________________________________________________________________________________________
ACGGGGTGGCCACTATCCCTGTCCTCCAGGAGCTCACGTATGCCTGCCTGTGAGCGCCTCGGCGACAGAGCCGGTGTCCACCCCTGCACTGTCCAC REF 5 139845604 - 139845699
TGAGCGCCTCGGCGACAGAGCCG MATURE-3P 5 139845655 - 139845772 mmu-miR-339-3p -
TCCCTGTCCTCCAGGAGCTCACG MATURE-5P 5 139845620 - 139845737 mmu-miR-339-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................CCCTGTCCTCCAGGAGCTCA............................................................. read_29306_25_22_13_10_11_18 MATURE-5P 99 24.50 60 29.70 39 19.31 20
................CCCTGTCCTCCAGGAGCTC.............................................................. read_144560_10_12_9_19_17_15 MATURE-5P 82 20.30 31 15.35 51 25.25 19
................CCCTGTCCTCCAGGAGCTCACG........................................................... read_93142_8_7_3_2_5_10 MATURE-5P 35 8.66 18 8.91 17 8.42 22
................CCCTGTCCTCCAGGAGCTCAC............................................................ read_295770_4_8_2_2_10_3 MATURE-5P 29 7.18 14 6.93 15 7.43 21
................CCCTGTCCTCCAGGAGCTCt............................................................. read_73226_8_4_3_4_5_4 MATURE-5P 28 6.93 15 7.43 13 6.44 t 19
................CCCTGTCCTCCAGGAGCT............................................................... read_275482_2_3_0_6_2_11 MATURE-5P 24 5.94 5 2.48 19 9.41 18
................CCCTGTCCTCCAGGAGCTCAt............................................................ read_286008_5_4_2_4_0_1 MATURE-5P 16 3.96 11 5.45 5 2.48 t 20
................CCCTGTCCTCCAGGAGCTCACt........................................................... read_178484_2_4_3_3_1_0 MATURE-5P 13 3.22 9 4.46 4 1.98 t 21
................CCCTGTCCTCCAGGAGCTCAtt........................................................... read_96068_4_0_0_1_3_1 MATURE-5P 9 2.23 4 1.98 5 2.48 tt 20
................CCCTGTCCTCCAGGAGCTt.............................................................. read_277049_1_0_0_0_4_2 MATURE-5P 7 1.73 1 0.50 6 2.97 t 18
................CCCTGTCCTCCAGGAGCTCACGT.......................................................... read_341945_1_2_1_1_1_0 MATURE-5P 6 1.49 4 1.98 2 0.99 23
................CCCTGTCCTCCAGGAGCTCAa............................................................ read_399990_2_0_1_0_1_0 MATURE-5P 4 0.99 3 1.49 1 0.50 a 20
................CCCTGTCCTCCAGGAGCTCAaa........................................................... read_322314_0_1_1_1_0_0 MATURE-5P 3 0.74 2 0.99 1 0.50 aa 20
................CCCTGTCCTCCAGGAGCTCAat........................................................... read_34387_0_0_2_1_0_0 MATURE-5P 3 0.74 2 0.99 1 0.50 at 20
................CCCTGTCCTCCAGGAGC................................................................ read_148567_1_0_0_0_0_2 MATURE-5P 3 0.74 1 0.50 2 0.99 17
................CCCTGTCCTCCAGGAGCTCg............................................................. read_270544_0_2_0_0_0_0 MATURE-5P 2 0.50 2 0.99 0 0.00 g 19
................CCCTGTCCTCCAGGAGCTCtt............................................................ read_190379_1_0_0_0_0_1 MATURE-5P 2 0.50 1 0.50 1 0.50 tt 19
................CCCTGTCCTCCAGGAGCTCttt........................................................... read_14441_0_0_0_0_0_2 MATURE-5P 2 0.50 0 0.00 2 0.99 ttt 19
................CCCTGTCCTCCAGGAGCTtc............................................................. read_287906_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 tc 18
................CCCTGTCCTCCAGGAGCTCga............................................................ read_279186_0_0_0_0_1_0 MATURE-5P 1 0.25 0 0.00 1 0.50 ga 19
................tCCTGTCCTCCAGGAGCTCAC............................................................ read_58389_0_0_0_0_1_0 MATURE-5P 1 0.25 0 0.00 1 0.50 20
................gCCTGTCCTCCAGGAGCTC.............................................................. read_19021_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 18
................CCCTGTCCTCCAGGAGCTCct............................................................ read_185515_0_0_0_0_0_1 MATURE-5P 1 0.25 0 0.00 1 0.50 ct 19
................CCCTGTCCTCCAGGAGCcCAC............................................................ read_373400_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 17C3
................CCCTGTCCTCCAGGcGCTCACG........................................................... read_150575_0_0_0_1_0_0 MATURE-5P 1 0.25 0 0.00 1 0.50 14C7
................CCCTGTCCTCCAGGAGCTtaa............................................................ read_331417_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 taa 18
................CCCTGTCCTCCAGGAGCTCAgc........................................................... read_11893_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 gc 20
................CCCTGTCCTCCAGGAGCTCAtaaa......................................................... read_330650_0_0_1_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 taaa 20
................CCCTGTCCTCCAGGAGCTCcc............................................................ read_236857_0_0_0_0_0_1 MATURE-5P 1 0.25 0 0.00 1 0.50 cc 19
................CCCTGTCCTCCAGGAGCTCcat........................................................... read_383727_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 cat 19
................CCCTGTCtTCCAGGAGCTCACG........................................................... read_62946_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 7T14
................CCCTGTCCTCCAGGAGCTttac........................................................... read_191106_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 ttac 18
................CCCTGTCCTCCAGGAGCTCttg........................................................... read_291081_0_0_0_1_0_0 MATURE-5P 1 0.25 0 0.00 1 0.50 ttg 19
................CCCTGTCCTCCAGGAGCTCAga........................................................... read_372756_0_0_0_0_0_1 MATURE-5P 1 0.25 0 0.00 1 0.50 ga 20
................aCCTGTCCTCCAGGAGCTCcCG........................................................... read_377802_0_0_0_0_1_0 MATURE-5P 1 0.25 0 0.00 1 0.50 18C2
................CCCTGTCCTCCAcGAGCTCAC............................................................ read_326413_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 12C8
................CCCTGTCCTCCAGtAGCTCACG........................................................... read_47164_0_0_0_1_0_0 MATURE-5P 1 0.25 0 0.00 1 0.50 13T8
................CCCTGTCCTCCAGGAGCTttt............................................................ read_58345_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 ttt 18
................CCCTGTCCTCCAGGAGCTCAta........................................................... read_364455_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 ta 20
................CCCTGTCCTCCAGGAGCTCACGa.......................................................... read_310029_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 a 22
................CCCTGTCCTCCAGGAGCTCACGTA......................................................... read_328615_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 24
................CCCTGTCCTCCAGGAGCTCACGTtt........................................................ read_393972_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 tt 23
................CCCTGTCCTCCAGGAGCTCcCG........................................................... read_265878_0_0_0_1_0_0 MATURE-5P 1 0.25 0 0.00 1 0.50 19C2
................CCCTGTCCTCCAGGAGCTCAgt........................................................... read_354520_0_0_0_0_1_0 MATURE-5P 1 0.25 0 0.00 1 0.50 gt 20
................CCCTGTCCTCCAGGAGCTtt............................................................. read_307779_0_0_0_0_1_0 MATURE-5P 1 0.25 0 0.00 1 0.50 tt 18
................CCCTGTCCTCCAGGcGCTCAC............................................................ read_198093_0_0_0_0_0_1 MATURE-5P 1 0.25 0 0.00 1 0.50 14C6
................CCCTGTCCTCCAGGAtCTCAC............................................................ read_122865_0_0_0_1_0_0 MATURE-5P 1 0.25 0 0.00 1 0.50 15T5
................CCCTGTCCTCCAGGAGCTCAttt.......................................................... read_81327_0_0_0_0_1_0 MATURE-5P 1 0.25 0 0.00 1 0.50 ttt 20
................CCCTGTCCTCCAGGAGCTCACGc.......................................................... read_168232_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 c 22
................CCCTGTCCTCCAGtAGCTCA............................................................. read_210010_0_0_0_0_0_1 MATURE-5P 1 0.25 0 0.00 1 0.50 13T6
................CCCTGTCCTCCAGGAGCTCc............................................................. read_61436_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 c 19
................CCCTGTCCTCCAGGAGCTCACGaga........................................................ read_181385_0_0_0_0_0_1 MATURE-5P 1 0.25 0 0.00 1 0.50 aga 22
................CCCTGTCCTCCAGaAGCTCACt........................................................... read_13417_0_0_0_1_0_0 MATURE-5P 1 0.25 0 0.00 1 0.50 t 13A7
................CCCTGTCaTCCAGGAGCTCACt........................................................... read_313218_0_1_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 t 7A13
................CCCTGTCCTCCAGGAGCTCAg............................................................ read_142532_1_0_0_0_0_0 MATURE-5P 1 0.25 1 0.50 0 0.00 g 20
---------- ---------- ----------
404 202 202
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 49 21 70 14.77%
MATURE-5P 202 202 404 85.23%
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251 223 474
[END]