[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************
ID                 : mmu-mir-338
DESCRIPTION        : mmu-mir-338 MI0000619 Mus musculus miR-338 stem-loop
CHROMOSOME         : 11
SPAN               : 119876079 - 119876176
LENGTH             : 98
SEQUENCE           : CAACGCTGCACAGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGGGTGCACAGTGACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-338-3p
ACCID      : MI0000619
PARENT     : mmu-mir-338
CHROMOSOME : 11
START      : 119876079
STOP       : 119876176
OFFSET     : 61..82
SEQUENCE   : TCCAGCATCAGTGATTTTGTTG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-338-5p
ACCID      : MI0000619
PARENT     : mmu-mir-338
CHROMOSOME : 11
START      : 119876079
STOP       : 119876176
OFFSET     : 26..47
SEQUENCE   : AACAATATCCTGGTGCTGAGTG
STRAND     : -
******************************



*** MATURE-3P ***
__________________________________________________________________________________________________
CAACGCTGCACAGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGGGTGCACAGTGACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCA REF                  11                   119876079 - 119876176 
                                                            TCCAGCATCAGTGATTTTGTTG                 MATURE-3P            11                   119876140 - 119876258 mmu-miR-338-3p       -                    
                         AACAATATCCTGGTGCTGAGTG                                                    MATURE-5P            11                   119876105 - 119876223 mmu-miR-338-5p       -                    
__________________________________________________________________________________________________

                                                                                              -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................................CCAGCATCAGTGATTTTGTTG.................   read_257987_6_3_1_1_2_0    MATURE-3P           13        50.00           10        52.63            3        42.86                        21   
.............................................................CCAGCATCAGTGATTTTGT...................    read_64287_0_0_1_0_2_0    MATURE-3P            3        11.54            1         5.26            2        28.57                        19   
.............................................................CCAGCATCAGTGATTTTGTTGA................   read_314742_1_0_1_0_0_1    MATURE-3P            3        11.54            2        10.53            1        14.29                        22   
.............................................................CCAGCATCAGTGATTTTGTT..................   read_388811_2_1_0_0_0_0    MATURE-3P            3        11.54            3        15.79            0         0.00                        20   
.............................................................CCAGCATCAGTGATTTTtTTG.................   read_237362_1_0_0_0_0_0    MATURE-3P            1         3.85            1         5.26            0         0.00                      17T3   
.............................................................CCAGCATCAGTGATTTTGTTGAt...............    read_56329_0_0_1_0_0_0    MATURE-3P            1         3.85            1         5.26            0         0.00            t           22   
.............................................................CCAGCATCAGTGtTTTTGTTGA................   read_246790_0_1_0_0_0_0    MATURE-3P            1         3.85            1         5.26            0         0.00                      12T9   
.............................................................aCAGCATCAGTGATTTTGTTG.................   read_303462_0_0_0_0_0_1    MATURE-3P            1         3.85            0         0.00            1        14.29                        20   
                                                                                                                                             ----------                ----------                ----------   
                                                                                                                                                     26                        19                         7                                          
                                                                                                                                                                          (73.08)                   (26.92)                                       




*** MATURE-5P ***
__________________________________________________________________________________________________
CAACGCTGCACAGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGGGTGCACAGTGACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCA REF                  11                   119876079 - 119876176 
                                                            TCCAGCATCAGTGATTTTGTTG                 MATURE-3P            11                   119876140 - 119876258 mmu-miR-338-3p       -                    
                         AACAATATCCTGGTGCTGAGTG                                                    MATURE-5P            11                   119876105 - 119876223 mmu-miR-338-5p       -                    
__________________________________________________________________________________________________

                                                                                              -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................ACAATATCCTGGTGCTGAGTGt...................................................   read_243440_0_1_0_0_0_0    MATURE-5P            1       100.00            1       100.00            0            0            t           21   
                                                                                                                                             ----------                ----------                ----------   
                                                                                                                                                      1                         1                         0                                          
                                                                                                                                                                         (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              19               7              26          96.30%
      MATURE-5P               1               0               1           3.70%
                     ----------      ----------      ----------                
                             20               7              27                



[END]
