[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-338
DESCRIPTION : mmu-mir-338 MI0000619 Mus musculus miR-338 stem-loop
CHROMOSOME : 11
SPAN : 119876079 - 119876176
LENGTH : 98
SEQUENCE : CAACGCTGCACAGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGGGTGCACAGTGACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-338-3p
ACCID : MI0000619
PARENT : mmu-mir-338
CHROMOSOME : 11
START : 119876079
STOP : 119876176
OFFSET : 61..82
SEQUENCE : TCCAGCATCAGTGATTTTGTTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-338-5p
ACCID : MI0000619
PARENT : mmu-mir-338
CHROMOSOME : 11
START : 119876079
STOP : 119876176
OFFSET : 26..47
SEQUENCE : AACAATATCCTGGTGCTGAGTG
STRAND : -
******************************
*** MATURE-3P ***
__________________________________________________________________________________________________
CAACGCTGCACAGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGGGTGCACAGTGACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCA REF 11 119876079 - 119876176
TCCAGCATCAGTGATTTTGTTG MATURE-3P 11 119876140 - 119876258 mmu-miR-338-3p -
AACAATATCCTGGTGCTGAGTG MATURE-5P 11 119876105 - 119876223 mmu-miR-338-5p -
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................CCAGCATCAGTGATTTTGTTG................. read_257987_6_3_1_1_2_0 MATURE-3P 13 50.00 10 52.63 3 42.86 21
.............................................................CCAGCATCAGTGATTTTGT................... read_64287_0_0_1_0_2_0 MATURE-3P 3 11.54 1 5.26 2 28.57 19
.............................................................CCAGCATCAGTGATTTTGTTGA................ read_314742_1_0_1_0_0_1 MATURE-3P 3 11.54 2 10.53 1 14.29 22
.............................................................CCAGCATCAGTGATTTTGTT.................. read_388811_2_1_0_0_0_0 MATURE-3P 3 11.54 3 15.79 0 0.00 20
.............................................................CCAGCATCAGTGATTTTtTTG................. read_237362_1_0_0_0_0_0 MATURE-3P 1 3.85 1 5.26 0 0.00 17T3
.............................................................CCAGCATCAGTGATTTTGTTGAt............... read_56329_0_0_1_0_0_0 MATURE-3P 1 3.85 1 5.26 0 0.00 t 22
.............................................................CCAGCATCAGTGtTTTTGTTGA................ read_246790_0_1_0_0_0_0 MATURE-3P 1 3.85 1 5.26 0 0.00 12T9
.............................................................aCAGCATCAGTGATTTTGTTG................. read_303462_0_0_0_0_0_1 MATURE-3P 1 3.85 0 0.00 1 14.29 20
---------- ---------- ----------
26 19 7
(73.08) (26.92)
*** MATURE-5P ***
__________________________________________________________________________________________________
CAACGCTGCACAGGCCGTCCTCCCCAACAATATCCTGGTGCTGAGTGGGTGCACAGTGACTCCAGCATCAGTGATTTTGTTGAAGAGGGCAGCTGCCA REF 11 119876079 - 119876176
TCCAGCATCAGTGATTTTGTTG MATURE-3P 11 119876140 - 119876258 mmu-miR-338-3p -
AACAATATCCTGGTGCTGAGTG MATURE-5P 11 119876105 - 119876223 mmu-miR-338-5p -
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................ACAATATCCTGGTGCTGAGTGt................................................... read_243440_0_1_0_0_0_0 MATURE-5P 1 100.00 1 100.00 0 0 t 21
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 19 7 26 96.30%
MATURE-5P 1 0 1 3.70%
---------- ---------- ----------
20 7 27
[END]