[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-335
DESCRIPTION : mmu-mir-335 MI0000817 Mus musculus miR-335 stem-loop
CHROMOSOME : 6
SPAN : 30691299 - 30691396
LENGTH : 98
SEQUENCE : TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-335-3p
ACCID : MI0000817
PARENT : mmu-mir-335
CHROMOSOME : 6
START : 30691299
STOP : 30691396
OFFSET : 56..77
SEQUENCE : TTTTTCATTATTGCTCCTGACC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-335-5p
ACCID : MI0000817
PARENT : mmu-mir-335
CHROMOSOME : 6
START : 30691299
STOP : 30691396
OFFSET : 16..38
SEQUENCE : TCAAGAGCAATAACGAAAAATGT
STRAND : +
******************************
*** MATURE-3P ***
__________________________________________________________________________________________________
TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA REF 6 30691299 - 30691396
TTTTTCATTATTGCTCCTGACC MATURE-3P 6 30691355 - 30691473 mmu-miR-335-3p +
TCAAGAGCAATAACGAAAAATGT MATURE-5P 6 30691315 - 30691434 mmu-miR-335-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................................TTTTCgTTATTGCTCCTGACC...................... read_195266_0_1_0_0_0_0 MATURE-3P 1 100.00 1 100.00 0 0 5G15
---------- ---------- ----------
1 1 0
(100.00) (0.00)
*** MATURE-5P ***
__________________________________________________________________________________________________
TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA REF 6 30691299 - 30691396
TTTTTCATTATTGCTCCTGACC MATURE-3P 6 30691355 - 30691473 mmu-miR-335-3p +
TCAAGAGCAATAACGAAAAATGT MATURE-5P 6 30691315 - 30691434 mmu-miR-335-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................CAAGAGCAATAACGAAAAAT............................................................... read_88159_2_2_3_0_0_0 MATURE-5P 7 58.33 7 77.78 0 0.00 20
................CAAGAGCAATAACGAAAAATGT............................................................. read_368808_0_1_0_0_0_1 MATURE-5P 2 16.67 1 11.11 1 33.33 22
................CAAGAGCAATAACaAAAAATG.............................................................. read_346096_0_0_0_0_0_1 MATURE-5P 1 8.33 0 0.00 1 33.33 13A7
................CAAGAGCAATAACGAAAAA................................................................ read_363938_0_0_0_1_0_0 MATURE-5P 1 8.33 0 0.00 1 33.33 19
................CAAGAGCAATAgCGAAAAATG.............................................................. read_83206_1_0_0_0_0_0 MATURE-5P 1 8.33 1 11.11 0 0.00 11G9
---------- ---------- ----------
12 9 3
(75.00) (25.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 1 0 1 7.69%
MATURE-5P 9 3 12 92.31%
---------- ---------- ----------
10 3 13
[END]