[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************************
ID                 : mmu-mir-331
DESCRIPTION        : mmu-mir-331 MI0000609 Mus musculus miR-331 stem-loop
CHROMOSOME         : 10
SPAN               : 93426513 - 93426608
LENGTH             : 96
SEQUENCE           : GAGTCTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACCCGT
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-331-3p
ACCID      : MI0000609
PARENT     : mmu-mir-331
CHROMOSOME : 10
START      : 93426513
STOP       : 93426608
OFFSET     : 61..81
SEQUENCE   : GCCCCTGGGCCTATCCTAGAA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-331-5p
ACCID      : MI0000609
PARENT     : mmu-mir-331
CHROMOSOME : 10
START      : 93426513
STOP       : 93426608
OFFSET     : 26..47
SEQUENCE   : CTAGGTATGGTCCCAGGGATCC
STRAND     : -
******************************



*** MATURE-3P ***
________________________________________________________________________________________________
GAGTCTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACCCGT REF                  10                   93426513 - 93426608  
                                                            GCCCCTGGGCCTATCCTAGAA                MATURE-3P            10                   93426574 - 93426689  mmu-miR-331-3p       -                    
                         CTAGGTATGGTCCCAGGGATCC                                                  MATURE-5P            10                   93426539 - 93426655  mmu-miR-331-5p       -                    
________________________________________________________________________________________________

                                                                                            -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................................CCCCTGGGCCTATCCTAGAAt...............   read_102098_1_1_2_1_0_0    MATURE-3P            5        26.32            4        40.00            1        11.11            t           20   
.............................................................CCCCTGGGCCTATCCTAGAA................   read_339087_0_0_0_1_2_0    MATURE-3P            3        15.79            0         0.00            3        33.33                        20   
.............................................................CCCCTGGGCCTATCCTAGAct...............    read_48274_0_1_0_1_0_0    MATURE-3P            2        10.53            1        10.00            1        11.11           ct           19   
.............................................................CCCCTGGGCCTATCCTAGA.................   read_408966_0_0_0_1_0_1    MATURE-3P            2        10.53            0         0.00            2        22.22                        19   
.............................................................CCCCTGGGCCTATCCTAGAcg...............   read_378360_1_0_0_0_0_0    MATURE-3P            1         5.26            1        10.00            0         0.00           cg           19   
.............................................................CCCCTGGGCCTATCCTAGAAtt..............     read_3897_0_1_0_0_0_0    MATURE-3P            1         5.26            1        10.00            0         0.00           tt           20   
..............................................................CCCTGGGCCTATCCTAGAAtta.............   read_160855_0_0_0_1_0_0    MATURE-3P            1         5.26            0         0.00            1        11.11          tta           19   
.............................................................CCCCTGGGCCTATCCTAGAAa...............   read_320958_0_1_0_0_0_0    MATURE-3P            1         5.26            1        10.00            0         0.00            a           20   
.............................................................CCCCTGGGCCTATCCTAGAcgt..............   read_107471_1_0_0_0_0_0    MATURE-3P            1         5.26            1        10.00            0         0.00          cgt           19   
.............................................................CCCCTGGGCCTATCCTAGAAC...............    read_11303_0_1_0_0_0_0    MATURE-3P            1         5.26            1        10.00            0         0.00                        21   
.............................................................CCCCTGGGCCTATCCTAGAAaaa.............   read_114990_0_0_0_0_0_1    MATURE-3P            1         5.26            0         0.00            1        11.11          aaa           20   
                                                                                                                                           ----------                ----------                ----------   
                                                                                                                                                   19                        10                         9                                          
                                                                                                                                                                        (52.63)                   (47.37)                                       




*** MATURE-5P ***
________________________________________________________________________________________________
GAGTCTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACCCGT REF                  10                   93426513 - 93426608  
                                                            GCCCCTGGGCCTATCCTAGAA                MATURE-3P            10                   93426574 - 93426689  mmu-miR-331-3p       -                    
                         CTAGGTATGGTCCCAGGGATCC                                                  MATURE-5P            10                   93426539 - 93426655  mmu-miR-331-5p       -                    
________________________________________________________________________________________________

                                                                                            -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................TAGGTATGGTCCCAGGGAT....................................................   read_266992_2_1_0_0_0_0    MATURE-5P            3        25.00            3        75.00            0         0.00                        19   
.........................CTAGGTATGGTCCCAGGGAT....................................................    read_91457_0_0_0_1_1_0    MATURE-5P            2        16.67            0         0.00            2        25.00                        20   
..........................TAGGTATGGTCCCAGGGATC...................................................   read_339584_0_0_0_1_1_0    MATURE-5P            2        16.67            0         0.00            2        25.00                        20   
..........................TAGGTATGGTCCCAGGGtTC...................................................   read_128357_0_0_0_0_1_0    MATURE-5P            1         8.33            0         0.00            1        12.50                      17T2   
..........................TAGGTATGGTCCCAGGGATCC..................................................    read_57486_0_0_0_1_0_0    MATURE-5P            1         8.33            0         0.00            1        12.50                        21   
.........................CTAGGTATGGTCCCAGGGATt...................................................    read_38464_0_0_0_1_0_0    MATURE-5P            1         8.33            0         0.00            1        12.50            t           20   
..........................TAGGTATGGTCCCAGGGATCCt.................................................   read_412203_1_0_0_0_0_0    MATURE-5P            1         8.33            1        25.00            0         0.00            t           21   
.........................CTAGGTATGGTCCCAGGGATaa..................................................   read_338299_0_0_0_0_1_0    MATURE-5P            1         8.33            0         0.00            1        12.50           aa           20   
                                                                                                                                           ----------                ----------                ----------   
                                                                                                                                                   12                         4                         8                                          
                                                                                                                                                                        (33.33)                   (66.67)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              10               9              19          61.29%
      MATURE-5P               4               8              12          38.71%
                     ----------      ----------      ----------                
                             14              17              31                



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