[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************
ID : mmu-mir-331
DESCRIPTION : mmu-mir-331 MI0000609 Mus musculus miR-331 stem-loop
CHROMOSOME : 10
SPAN : 93426513 - 93426608
LENGTH : 96
SEQUENCE : GAGTCTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACCCGT
OVERHANG THRESHOLD : 75%
*********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-331-3p
ACCID : MI0000609
PARENT : mmu-mir-331
CHROMOSOME : 10
START : 93426513
STOP : 93426608
OFFSET : 61..81
SEQUENCE : GCCCCTGGGCCTATCCTAGAA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-331-5p
ACCID : MI0000609
PARENT : mmu-mir-331
CHROMOSOME : 10
START : 93426513
STOP : 93426608
OFFSET : 26..47
SEQUENCE : CTAGGTATGGTCCCAGGGATCC
STRAND : -
******************************
*** MATURE-3P ***
________________________________________________________________________________________________
GAGTCTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACCCGT REF 10 93426513 - 93426608
GCCCCTGGGCCTATCCTAGAA MATURE-3P 10 93426574 - 93426689 mmu-miR-331-3p -
CTAGGTATGGTCCCAGGGATCC MATURE-5P 10 93426539 - 93426655 mmu-miR-331-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................CCCCTGGGCCTATCCTAGAAt............... read_102098_1_1_2_1_0_0 MATURE-3P 5 26.32 4 40.00 1 11.11 t 20
.............................................................CCCCTGGGCCTATCCTAGAA................ read_339087_0_0_0_1_2_0 MATURE-3P 3 15.79 0 0.00 3 33.33 20
.............................................................CCCCTGGGCCTATCCTAGAct............... read_48274_0_1_0_1_0_0 MATURE-3P 2 10.53 1 10.00 1 11.11 ct 19
.............................................................CCCCTGGGCCTATCCTAGA................. read_408966_0_0_0_1_0_1 MATURE-3P 2 10.53 0 0.00 2 22.22 19
.............................................................CCCCTGGGCCTATCCTAGAcg............... read_378360_1_0_0_0_0_0 MATURE-3P 1 5.26 1 10.00 0 0.00 cg 19
.............................................................CCCCTGGGCCTATCCTAGAAtt.............. read_3897_0_1_0_0_0_0 MATURE-3P 1 5.26 1 10.00 0 0.00 tt 20
..............................................................CCCTGGGCCTATCCTAGAAtta............. read_160855_0_0_0_1_0_0 MATURE-3P 1 5.26 0 0.00 1 11.11 tta 19
.............................................................CCCCTGGGCCTATCCTAGAAa............... read_320958_0_1_0_0_0_0 MATURE-3P 1 5.26 1 10.00 0 0.00 a 20
.............................................................CCCCTGGGCCTATCCTAGAcgt.............. read_107471_1_0_0_0_0_0 MATURE-3P 1 5.26 1 10.00 0 0.00 cgt 19
.............................................................CCCCTGGGCCTATCCTAGAAC............... read_11303_0_1_0_0_0_0 MATURE-3P 1 5.26 1 10.00 0 0.00 21
.............................................................CCCCTGGGCCTATCCTAGAAaaa............. read_114990_0_0_0_0_0_1 MATURE-3P 1 5.26 0 0.00 1 11.11 aaa 20
---------- ---------- ----------
19 10 9
(52.63) (47.37)
*** MATURE-5P ***
________________________________________________________________________________________________
GAGTCTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACCCGT REF 10 93426513 - 93426608
GCCCCTGGGCCTATCCTAGAA MATURE-3P 10 93426574 - 93426689 mmu-miR-331-3p -
CTAGGTATGGTCCCAGGGATCC MATURE-5P 10 93426539 - 93426655 mmu-miR-331-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................TAGGTATGGTCCCAGGGAT.................................................... read_266992_2_1_0_0_0_0 MATURE-5P 3 25.00 3 75.00 0 0.00 19
.........................CTAGGTATGGTCCCAGGGAT.................................................... read_91457_0_0_0_1_1_0 MATURE-5P 2 16.67 0 0.00 2 25.00 20
..........................TAGGTATGGTCCCAGGGATC................................................... read_339584_0_0_0_1_1_0 MATURE-5P 2 16.67 0 0.00 2 25.00 20
..........................TAGGTATGGTCCCAGGGtTC................................................... read_128357_0_0_0_0_1_0 MATURE-5P 1 8.33 0 0.00 1 12.50 17T2
..........................TAGGTATGGTCCCAGGGATCC.................................................. read_57486_0_0_0_1_0_0 MATURE-5P 1 8.33 0 0.00 1 12.50 21
.........................CTAGGTATGGTCCCAGGGATt................................................... read_38464_0_0_0_1_0_0 MATURE-5P 1 8.33 0 0.00 1 12.50 t 20
..........................TAGGTATGGTCCCAGGGATCCt................................................. read_412203_1_0_0_0_0_0 MATURE-5P 1 8.33 1 25.00 0 0.00 t 21
.........................CTAGGTATGGTCCCAGGGATaa.................................................. read_338299_0_0_0_0_1_0 MATURE-5P 1 8.33 0 0.00 1 12.50 aa 20
---------- ---------- ----------
12 4 8
(33.33) (66.67)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 10 9 19 61.29%
MATURE-5P 4 8 12 38.71%
---------- ---------- ----------
14 17 31
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