[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-330
DESCRIPTION : mmu-mir-330 MI0000607 Mus musculus miR-330 stem-loop
CHROMOSOME : 7
SPAN : 19766814 - 19766911
LENGTH : 98
SEQUENCE : GACCCTTTGGCGATCTCTGCCTCTCTGGGCCTGTGTCTTAGGCTCTTCAAGATCCAACGAGCAAAGCACAGGGCCTGCAGAGAGGTAGCGCTCTGCTC
OVERHANG THRESHOLD : 75%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-330
ACCID : MI0000607
PARENT : mmu-mir-330
CHROMOSOME : 7
START : 19766814
STOP : 19766911
OFFSET : 22..43
SEQUENCE : TCTCTGGGCCTGTGTCTTAGGC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-330*
ACCID : MI0000607
PARENT : mmu-mir-330
CHROMOSOME : 7
START : 19766814
STOP : 19766911
OFFSET : 61..83
SEQUENCE : GCAAAGCACAGGGCCTGCAGAGA
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________________________
GACCCTTTGGCGATCTCTGCCTCTCTGGGCCTGTGTCTTAGGCTCTTCAAGATCCAACGAGCAAAGCACAGGGCCTGCAGAGAGGTAGCGCTCTGCTC REF 7 19766814 - 19766911
TCTCTGGGCCTGTGTCTTAGGC MATURE 7 19766836 - 19766954 mmu-miR-330 +
GCAAAGCACAGGGCCTGCAGAGA MATURESTAR 7 19766875 - 19766994 mmu-miR-330* +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................CTCTGGGCCTGTGTCTTAG.......................................................... read_51226_2_1_1_0_1_0 MATURE 5 13.16 4 20.00 1 5.56 19
......................CTCTGGGCCTGTGTCTTAGG......................................................... read_220636_0_0_1_0_0_3 MATURE 4 10.53 1 5.00 3 16.67 20
......................CTCTGGGCCTGTGTCTTAGGC........................................................ read_136520_1_1_0_0_1_1 MATURE 4 10.53 2 10.00 2 11.11 21
......................CTCTGGGCCTGTGTCTTAGGa........................................................ read_19712_0_0_1_0_1_0 MATURE 2 5.26 1 5.00 1 5.56 a 20
......................CTCTGGGCCTGTGTCTTAGGCT....................................................... read_266958_0_1_0_0_1_0 MATURE 2 5.26 1 5.00 1 5.56 22
......................CTCTGGGCCTGTGTCTTAGGaat...................................................... read_232150_0_1_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 aat 20
......................CTCTGGGCaTGTGTCTTAGGCT....................................................... read_2228_0_0_1_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 8A13
......................CTCTGGGCCTGTGTCTTAGaa........................................................ read_371327_0_1_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 aa 19
......................CTCTGGGCCTGTGTCTTAGGt........................................................ read_172512_1_0_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 t 20
......................CTCTGGGCCTGTGTCTTAGGat....................................................... read_362084_1_0_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 at 20
......................CTCTGGGCCTGTGTCTTAGGCTCT..................................................... read_100900_0_0_0_0_1_0 MATURE 1 2.63 0 0.00 1 5.56 24
......................CTCTGGGCCTGTGTCTTAGGCTC...................................................... read_370141_1_0_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 23
......................CTCTGGGCCTGTGTCTTAGGCaa...................................................... read_79870_0_0_0_0_0_1 MATURE 1 2.63 0 0.00 1 5.56 aa 21
......................CTCTGGGCCTGTGTCTTAtgtat...................................................... read_309055_0_0_0_1_0_0 MATURE 1 2.63 0 0.00 1 5.56 tgtat 18
......................CTCTGGGCCTGTGTCTTAGtat....................................................... read_261493_1_0_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 tat 19
......................CTCTGGGCCTGTGTCTTAGGCg....................................................... read_160197_0_1_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 g 21
......................CTCTGGGCCTGTGTCTTAtg......................................................... read_246376_0_0_0_0_1_0 MATURE 1 2.63 0 0.00 1 5.56 tg 18
......................CTCTGGGCCTGTGTCTTAGGCa....................................................... read_220524_0_0_0_1_0_0 MATURE 1 2.63 0 0.00 1 5.56 a 21
......................CTCTGGGaCTGTGTCTTAGGCTtt..................................................... read_394107_0_0_0_1_0_0 MATURE 1 2.63 0 0.00 1 5.56 tt 7A14
......................CTCTGGGCCTGTGTCTTAGGCTtc..................................................... read_411083_0_0_0_0_0_1 MATURE 1 2.63 0 0.00 1 5.56 tc 22
......................CTCTGGGCCTGTGTaTTAGG......................................................... read_138901_0_0_0_1_0_0 MATURE 1 2.63 0 0.00 1 5.56 14A5
......................CTCTGGGCCTGTGTCTTAGtc........................................................ read_110257_0_0_1_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 tc 19
......................aTCTGGGCCTGTGTCTTAGGCT....................................................... read_294351_0_0_0_0_0_1 MATURE 1 2.63 0 0.00 1 5.56 21
......................CTCTGGGCCTGTGTCTTAGGCTat..................................................... read_221386_0_0_1_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 at 22
......................CTCTGGGCCTGTGTCTTAGGCaaaa.................................................... read_11211_0_0_0_1_0_0 MATURE 1 2.63 0 0.00 1 5.56 aaaa 21
......................CTCTGGGCCTGTGTCTTA........................................................... read_131043_0_1_0_0_0_0 MATURE 1 2.63 1 5.00 0 0.00 18
---------- ---------- ----------
38 20 18
(52.63) (47.37)
*** MATURESTAR ***
__________________________________________________________________________________________________
GACCCTTTGGCGATCTCTGCCTCTCTGGGCCTGTGTCTTAGGCTCTTCAAGATCCAACGAGCAAAGCACAGGGCCTGCAGAGAGGTAGCGCTCTGCTC REF 7 19766814 - 19766911
TCTCTGGGCCTGTGTCTTAGGC MATURE 7 19766836 - 19766954 mmu-miR-330 +
GCAAAGCACAGGGCCTGCAGAGA MATURESTAR 7 19766875 - 19766994 mmu-miR-330* +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................................AAAGCACAGGGCCTGCAGAGAGt.............. read_318121_3_5_0_0_0_0 MATURESTAR 8 20.00 8 25.81 0 0.00 t 22
..............................................................AAAGCACAGGGCCTGCAGAGAG............... read_41067_4_1_1_0_0_0 MATURESTAR 6 15.00 6 19.35 0 0.00 22
..............................................................AAAGCACAGGGCCTGCAGAGt................ read_66218_0_2_0_1_1_0 MATURESTAR 4 10.00 2 6.45 2 22.22 t 20
..............................................................AAAGCACAGGGCCTGCAGAG................. read_219113_3_0_0_0_1_0 MATURESTAR 4 10.00 3 9.68 1 11.11 20
..............................................................AAAGCACAGGGCCTGCAGAGAGG.............. read_353166_1_0_0_0_1_1 MATURESTAR 3 7.50 1 3.23 2 22.22 23
.............................................................CAAAGCACAGGGCCTGCAGAGA................ read_279796_1_2_0_0_0_0 MATURESTAR 3 7.50 3 9.68 0 0.00 22
..............................................................AAAGCACAGGGCCTGCAGAGA................ read_258716_1_1_0_0_1_0 MATURESTAR 3 7.50 2 6.45 1 11.11 21
.............................................................CAAAGCACAGGGCCTGCAGAG................. read_286299_1_0_0_0_0_0 MATURESTAR 1 2.50 1 3.23 0 0.00 21
.............................................................CAAAGaACAGGGCCTGCAGAG................. read_138347_0_1_0_0_0_0 MATURESTAR 1 2.50 1 3.23 0 0.00 5A15
.............................................................CAAAGCACAGGGCCTGCAGAGttat............. read_29533_0_0_0_1_0_0 MATURESTAR 1 2.50 0 0.00 1 11.11 ttat 21
..............................................................AAAGCACAGGGCCTGCAGAa................. read_316031_0_1_0_0_0_0 MATURESTAR 1 2.50 1 3.23 0 0.00 a 19
.............................................................CAAAGCACAGGGaCTGCAGAG................. read_253476_0_1_0_0_0_0 MATURESTAR 1 2.50 1 3.23 0 0.00 12A8
..............................................................AAAGCACAGGGCCTGCAGAaat............... read_138646_0_0_0_0_0_1 MATURESTAR 1 2.50 0 0.00 1 11.11 aat 19
...............................................................AAGCACAGGGCCTGCAGAGAGt.............. read_305421_0_1_0_0_0_0 MATURESTAR 1 2.50 1 3.23 0 0.00 t 21
..............................................................AAAGCACAGGGCCTGCAGAGAa............... read_345382_0_0_0_1_0_0 MATURESTAR 1 2.50 0 0.00 1 11.11 a 21
..............................................................AAAGCACAGGGaCTGCAGAGA................ read_240631_0_1_0_0_0_0 MATURESTAR 1 2.50 1 3.23 0 0.00 11A9
---------- ---------- ----------
40 31 9
(77.50) (22.50)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 20 18 38 48.72%
MATURESTAR 31 9 40 51.28%
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51 27 78
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