[BEGIN]

REFERENCE HAIRPIN
******************************************************************************************
ID                 : mmu-mir-33
DESCRIPTION        : mmu-mir-33 MI0000707 Mus musculus miR-33 stem-loop
CHROMOSOME         : 15
SPAN               : 82028552 - 82028620
LENGTH             : 69
SEQUENCE           : CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAATACCTGTGCAATGTTTCCACAGTGCATCACGG
OVERHANG THRESHOLD : 75%
******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-33
ACCID      : MI0000707
PARENT     : mmu-mir-33
CHROMOSOME : 15
START      : 82028552
STOP       : 82028620
OFFSET     : 6..26
SEQUENCE   : GTGCATTGTAGTTGCATTGCA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-33*
ACCID      : MI0000707
PARENT     : mmu-mir-33
CHROMOSOME : 15
START      : 82028552
STOP       : 82028620
OFFSET     : 46..67
SEQUENCE   : CAATGTTTCCACAGTGCATCAC
STRAND     : +
******************************



*** MATURESTAR ***
_____________________________________________________________________
CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAATACCTGTGCAATGTTTCCACAGTGCATCACGG REF                  15                   82028552 - 82028620  
     GTGCATTGTAGTTGCATTGCA                                            MATURE               15                   82028558 - 82028646  mmu-miR-33           +                    
                                             CAATGTTTCCACAGTGCATCAC   MATURESTAR           15                   82028598 - 82028687  mmu-miR-33*          +                    
_____________________________________________________________________

                                                                 -SEQ-                      -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............................................AATGTTTCCACAGTGCATCAt...   read_329110_13_9_14_4_2_0   MATURESTAR           42        44.68           36        48.00            6        31.58            t           20   
..............................................AATGTTTCCACAGTGCATCA....     read_138554_4_5_5_3_3_4   MATURESTAR           24        25.53           14        18.67           10        52.63                        20   
..............................................AATGTTTCCACAGTGCAT......      read_28996_1_6_2_1_0_1   MATURESTAR           11        11.70            9        12.00            2        10.53                        18   
..............................................AATGTTTCCACAGTGCATC.....      read_54694_1_3_0_0_0_0   MATURESTAR            4         4.26            4         5.33            0         0.00                        19   
...............................................ATGTTTCCACAGTGCATCAtt..     read_241787_1_0_1_0_0_0   MATURESTAR            2         2.13            2         2.67            0         0.00           tt           19   
..............................................AATGTTTCCACAGTGCATCAtc..     read_389743_1_0_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00           tc           20   
..............................................AATGTTTCCACAGTGCATCAta..     read_107105_0_1_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00           ta           20   
..............................................AATGTTTCCACAGTGCATCAaa..     read_302650_0_1_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00           aa           20   
...............................................ATGTTTCCACAGTGCATCAt...      read_87020_1_0_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00            t           19   
..............................................AATGTTTCCACAGTGCATCAtt..     read_321987_0_0_1_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00           tt           20   
...............................................ATGTTTCCACAGTGCATCAat..     read_215948_0_0_0_0_0_1   MATURESTAR            1         1.06            0         0.00            1         5.26           at           19   
..............................................AATGTTTCCACAGTGCATCt....     read_222054_0_0_1_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00            t           19   
..............................................AATGTTTCCACAGTGCATCAa...     read_122186_1_0_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00            a           20   
..............................................AATGTTTCCACAGTGCATCAgt..     read_316770_0_1_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00           gt           20   
..............................................cATGTTTCCACAGTGCATCAt...     read_371280_0_1_0_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00            t           19   
..............................................AATGTTTCCACAGTGCATCAat..     read_152330_0_0_1_0_0_0   MATURESTAR            1         1.06            1         1.33            0         0.00           at           20   
                                                                                                                  ----------                ----------                ----------   
                                                                                                                          94                        75                        19                                          
                                                                                                                                               (79.79)                   (20.21)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
     MATURESTAR              75              19              94         100.00%
                     ----------      ----------      ----------                
                             75              19              94                



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