[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************
ID                 : mmu-mir-328
DESCRIPTION        : mmu-mir-328 MI0000603 Mus musculus miR-328 stem-loop
CHROMOSOME         : 8
SPAN               : 107832264 - 107832360
LENGTH             : 97
SEQUENCE           : CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT
OVERHANG THRESHOLD : 75%
**********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-328
ACCID      : MI0000603
PARENT     : mmu-mir-328
CHROMOSOME : 8
START      : 107832264
STOP       : 107832360
OFFSET     : 61..82
SEQUENCE   : CTGGCCCTCTCTGCCCTTCCGT
STRAND     : -
******************************



*** MATURE ***
_________________________________________________________________________________________________
CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT REF                  8                    107832264 - 107832360 
                                                            CTGGCCCTCTCTGCCCTTCCGT                MATURE               8                    107832325 - 107832442 mmu-miR-328          -                    
_________________________________________________________________________________________________

                                                                                             -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................................TGGCCCTCTCTGCCCTTCCGT................   read_360393_8_9_1_4_5_6       MATURE           33        33.67           18        28.57           15        42.86                        21   
.............................................................TGGCCCTCTCTGCCCTTCCGTt...............   read_352724_8_5_1_1_0_2       MATURE           17        17.35           14        22.22            3         8.57            t           21   
.............................................................TGGCCCTCTCTGCCCTTCCGTtt..............   read_382389_1_1_0_1_2_0       MATURE            5         5.10            2         3.17            3         8.57           tt           21   
.............................................................TGGCCCTCTCTGCCCTTCCtt................   read_388419_2_1_0_0_1_0       MATURE            4         4.08            3         4.76            1         2.86           tt           19   
.............................................................TGGCCCTCTCTGCCCTTCCttt...............   read_395761_2_0_0_0_1_0       MATURE            3         3.06            2         3.17            1         2.86          ttt           19   
.............................................................TGGCCCTCTCTGCCCTTCCGTa...............   read_342841_1_1_1_0_0_0       MATURE            3         3.06            3         4.76            0         0.00            a           21   
..............................................................GGCCCTCTCTGCCCTTCCGTt...............   read_137996_1_1_1_0_0_0       MATURE            3         3.06            3         4.76            0         0.00            t           20   
.............................................................TGGCCCTCTCTGCCCTTCCG.................   read_408485_1_0_0_1_0_0       MATURE            2         2.04            1         1.59            1         2.86                        20   
.............................................................TGGCCCTCTCTGCCCTTCCGa................   read_121036_0_0_0_0_2_0       MATURE            2         2.04            0         0.00            2         5.71            a           20   
.............................................................TGGCCCTCTCTGCCCTTCCGTat..............   read_309813_1_0_0_1_0_0       MATURE            2         2.04            1         1.59            1         2.86           at           21   
.............................................................TGGCCCTCTCTGCCCTTCCGc................   read_287485_0_2_0_0_0_0       MATURE            2         2.04            2         3.17            0         0.00            c           20   
.................................................................CCTCTCTGCCCTTCCGT................   read_341765_0_0_0_0_0_2       MATURE            2         2.04            0         0.00            2         5.71                        17   
............................................................CTGGCCCTCTCTGCCCTTCCGT................   read_276199_0_2_0_0_0_0       MATURE            2         2.04            2         3.17            0         0.00                        22   
.............................................................TGGCCCTCTCTGCCaTTCCGT................   read_407115_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00                      14A6   
.............................................................TGGCCCTCTCTGCCCTTCCGTttc.............   read_278939_0_0_0_1_0_0       MATURE            1         1.02            0         0.00            1         2.86          ttc           21   
.............................................................cGGCCCTCTCTGCCCTTCCGT................   read_204767_0_0_0_0_0_1       MATURE            1         1.02            0         0.00            1         2.86                        20   
.............................................................TGGCCCTCTCTGCCCTTCCGTCt..............   read_263470_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00            t           22   
.............................................................TGGCCCTtTCTGCCCTTCCGT................   read_353228_0_0_0_0_0_1       MATURE            1         1.02            0         0.00            1         2.86                      7T13   
.............................................................TGGCCCTCTCTGCCaTTCCGTt...............   read_384541_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00            t         14A6   
..............................................................GGCCCTCTCTGCCCTTCCGTa...............    read_57464_0_0_0_0_1_0       MATURE            1         1.02            0         0.00            1         2.86            a           20   
.............................................................TGGCCCTCTCTaCCCTTCCGT................   read_225784_0_1_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00                      11A9   
.............................................................TGGCCCTCTCTGCCCTTCC..................    read_59917_0_0_1_0_0_0       MATURE            1         1.02            1         1.59            0         0.00                        19   
.............................................................TGGCCCTCTCTGCCCTTCCtttt..............   read_260287_0_1_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00         tttt           19   
.............................................................TGGCCCTCTCTGCCCTTCtGT................    read_36953_0_1_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00                      18T2   
.............................................................TGGCCCTCTCTGCCCTTC...................   read_179672_0_0_0_0_1_0       MATURE            1         1.02            0         0.00            1         2.86                        18   
............................................................CTGGCCCTCTCTGCCCTTCCGTt...............   read_374823_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00            t           22   
.............................................................TGGCCCTCTCTGCCCTTCgGT................    read_85466_0_0_0_1_0_0       MATURE            1         1.02            0         0.00            1         2.86                      18G2   
.............................................................cGGCCCTCTCTGCCCTTCCGTt...............   read_225815_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00            t           20   
.............................................................TGGCCCTCTCTGCCCTTCCGaat..............   read_341939_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00          aat           20   
.............................................................TGcCCCTCTCTGCCCTTCCGTt...............   read_406798_1_0_0_0_0_0       MATURE            1         1.02            1         1.59            0         0.00            t         2C18   
.............................................................TGGCCCTCTCTGCCCTTCCttta..............   read_175471_0_0_1_0_0_0       MATURE            1         1.02            1         1.59            0         0.00         ttta           19   
                                                                                                                                            ----------                ----------                ----------   
                                                                                                                                                    98                        63                        35                                          
                                                                                                                                                                         (64.29)                   (35.71)                                       




*** OTHER ***
_________________________________________________________________________________________________
CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT REF                  8                    107832264 - 107832360 
                                                            CTGGCCCTCTCTGCCCTTCCGT                MATURE               8                    107832325 - 107832442 mmu-miR-328          -                    
_________________________________________________________________________________________________

                                                                                             -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..GTCTCGGAGCCTGGGGCA..............................................................................   read_382210_2_0_0_0_0_2        OTHER            4        36.36            2        28.57            2        50.00                        18   
...........................................GAAAGTATCTACAGCCC......................................   read_206066_1_0_1_0_0_1        OTHER            3        27.27            2        28.57            1        25.00                        17   
.TGTCTCGGAGCCTGGGGCA..............................................................................   read_237576_1_1_0_0_0_0        OTHER            2        18.18            2        28.57            0         0.00                        19   
.....................GGGGGCAGGAGGGGCTCAGGG........................................................   read_333655_0_1_0_0_1_0        OTHER            2        18.18            1        14.29            1        25.00                        21   
                                                                                                                                            ----------                ----------                ----------   
                                                                                                                                                    11                         7                         4                                          
                                                                                                                                                                         (63.64)                   (36.36)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              63              35              98          89.91%
          OTHER               7               4              11          10.09%
                     ----------      ----------      ----------                
                             70              39             109                



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