[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************************
ID : mmu-mir-324
DESCRIPTION : mmu-mir-324 MI0000595 Mus musculus miR-324 stem-loop
CHROMOSOME : 11
SPAN : 69825545 - 69825633
LENGTH : 89
SEQUENCE : AACTGACTATGCCTCCTCGCATCCCCTAGGGCATTGGTGTAAAGCTGGAGACCCACTGCCCCAGGTGCTGCTGGGGGTTGTAGTCTGAC
OVERHANG THRESHOLD : 75%
**************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-324-3p
ACCID : MI0000595
PARENT : mmu-mir-324
CHROMOSOME : 11
START : 69825545
STOP : 69825633
OFFSET : 53..72
SEQUENCE : CCACTGCCCCAGGTGCTGCT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-324-5p
ACCID : MI0000595
PARENT : mmu-mir-324
CHROMOSOME : 11
START : 69825545
STOP : 69825633
OFFSET : 18..40
SEQUENCE : CGCATCCCCTAGGGCATTGGTGT
STRAND : +
******************************
*** MATURE-3P ***
_________________________________________________________________________________________
AACTGACTATGCCTCCTCGCATCCCCTAGGGCATTGGTGTAAAGCTGGAGACCCACTGCCCCAGGTGCTGCTGGGGGTTGTAGTCTGAC REF 11 69825545 - 69825633
CCACTGCCCCAGGTGCTGCT MATURE-3P 11 69825598 - 69825705 mmu-miR-324-3p +
CGCATCCCCTAGGGCATTGGTGT MATURE-5P 11 69825563 - 69825673 mmu-miR-324-5p +
_________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................................................CTGCCCCAGGTGCTGCTGGt............... read_297047_30_23_10_19_22_12 MATURE-3P 116 53.95 63 52.07 53 56.38 t 19
.......................................................CTGCCCCAGGTGCTGCTGG................ read_231546_4_5_1_2_3_3 MATURE-3P 18 8.37 10 8.26 8 8.51 19
.......................................................CTGCCCCAGGTGCTGCTGGtt.............. read_197595_6_4_1_1_2_1 MATURE-3P 15 6.98 11 9.09 4 4.26 tt 19
.....................................................CACTGCCCCAGGTGCTGCTGG................ read_212328_0_4_0_3_2_0 MATURE-3P 9 4.19 4 3.31 5 5.32 21
.......................................................CTGCCCCAGGTGCTGCTGGttt............. read_252591_1_3_1_0_0_1 MATURE-3P 6 2.79 5 4.13 1 1.06 ttt 19
.....................................................CACTGCCCCAGGTGCTGCTGGt............... read_395009_2_2_0_0_1_0 MATURE-3P 5 2.33 4 3.31 1 1.06 t 21
.......................................................CTGCCCCAGGTGCTGCTGGa............... read_79968_0_2_0_1_2_0 MATURE-3P 5 2.33 2 1.65 3 3.19 a 19
.......................................................CTGCCCCAGGTGCTGCTGGat.............. read_192775_0_3_1_0_0_0 MATURE-3P 4 1.86 4 3.31 0 0.00 at 19
.......................................................CTGCCCCAGGTGCTGCTGtt............... read_353948_0_0_1_0_2_1 MATURE-3P 4 1.86 1 0.83 3 3.19 tt 18
.......................................................CTGCCCCAGGTGCTGCTGGta.............. read_218648_1_2_0_0_0_0 MATURE-3P 3 1.40 3 2.48 0 0.00 ta 19
.....................................................CACTGCCCCAGGTGCTGCTG................. read_54525_1_0_0_1_0_0 MATURE-3P 2 0.93 1 0.83 1 1.06 20
.......................................................CTGCCCCAGGTGCTGCTG................. read_4920_0_0_0_1_0_1 MATURE-3P 2 0.93 0 0.00 2 2.13 18
.......................................................CTGCCCCAGGTGCTGCTGGtatt............ read_155624_0_1_1_0_0_0 MATURE-3P 2 0.93 2 1.65 0 0.00 tatt 19
.......................................................CTGCCCCAGGTGCTGCTGGtat............. read_196839_2_0_0_0_0_0 MATURE-3P 2 0.93 2 1.65 0 0.00 tat 19
.......................................................CTGCCCCAGGTGCTGCTGGaat............. read_3973_0_1_0_0_0_1 MATURE-3P 2 0.93 1 0.83 1 1.06 aat 19
.....................................................CACTGCCCCAGGTGCTGCTGtt............... read_348721_0_1_0_0_0_1 MATURE-3P 2 0.93 1 0.83 1 1.06 tt 20
.....................................................CACTGCCCCAGGTGCTGCTGt................ read_184073_1_0_0_0_1_0 MATURE-3P 2 0.93 1 0.83 1 1.06 t 20
.......................................................CTGCCCCAGGTGCTGCTGGtta............. read_235142_0_0_0_0_1_0 MATURE-3P 1 0.47 0 0.00 1 1.06 tta 19
.......................................................CTGCCCCAGGTGCTGCTGGaag............. read_307514_0_0_0_0_0_1 MATURE-3P 1 0.47 0 0.00 1 1.06 aag 19
.......................................................CTGCCCCAGGTGCTGCTGttt.............. read_221721_0_1_0_0_0_0 MATURE-3P 1 0.47 1 0.83 0 0.00 ttt 18
.......................................................CTGCCCCAGGTGCTGCT.................. read_300254_0_0_0_1_0_0 MATURE-3P 1 0.47 0 0.00 1 1.06 17
.......................................................CTGCCCCAGGTGCTGCTGa................ read_296807_0_1_0_0_0_0 MATURE-3P 1 0.47 1 0.83 0 0.00 a 18
......................................................ACTGCCCCAGGTGCTGCTGGt............... read_386077_0_0_1_0_0_0 MATURE-3P 1 0.47 1 0.83 0 0.00 t 20
........................................................TGCCCCAGGTGCTGCTGGt............... read_19837_0_0_0_0_0_1 MATURE-3P 1 0.47 0 0.00 1 1.06 t 18
.......................................................CTGCCCCAGGTGCTGCTGGtaa............. read_90220_1_0_0_0_0_0 MATURE-3P 1 0.47 1 0.83 0 0.00 taa 19
.......................................................CTGCCCCAGGTGCTGCTGt................ read_247233_0_0_0_1_0_0 MATURE-3P 1 0.47 0 0.00 1 1.06 t 18
.......................................................CTGCCCCAGGTGCTGCTGGaa.............. read_196540_0_0_0_1_0_0 MATURE-3P 1 0.47 0 0.00 1 1.06 aa 19
.....................................................CACTGCCCCAGGTGCTGCTatt............... read_2665_0_0_0_1_0_0 MATURE-3P 1 0.47 0 0.00 1 1.06 att 19
.......................................................CTGCCCCAGGTGCTGCTGGaga............. read_161312_0_1_0_0_0_0 MATURE-3P 1 0.47 1 0.83 0 0.00 aga 19
.....................................................CACTGCCCCAGGTGCTGCT.................. read_277040_0_0_0_0_1_0 MATURE-3P 1 0.47 0 0.00 1 1.06 19
.......................................................CTGCCCCAGGTGCTGCTGGtagt............ read_409952_0_0_0_1_0_0 MATURE-3P 1 0.47 0 0.00 1 1.06 tagt 19
.......................................................CTGCCCCAGGTGCTGCTGGaaa............. read_225244_1_0_0_0_0_0 MATURE-3P 1 0.47 1 0.83 0 0.00 aaa 19
.......................................................CTGCCCCAGGTGCTGCTGGG............... read_168314_0_0_0_1_0_0 MATURE-3P 1 0.47 0 0.00 1 1.06 20
---------- ---------- ----------
215 121 94
(56.28) (43.72)
*** MATURE-5P ***
_________________________________________________________________________________________
AACTGACTATGCCTCCTCGCATCCCCTAGGGCATTGGTGTAAAGCTGGAGACCCACTGCCCCAGGTGCTGCTGGGGGTTGTAGTCTGAC REF 11 69825545 - 69825633
CCACTGCCCCAGGTGCTGCT MATURE-3P 11 69825598 - 69825705 mmu-miR-324-3p +
CGCATCCCCTAGGGCATTGGTGT MATURE-5P 11 69825563 - 69825673 mmu-miR-324-5p +
_________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................GCATCCCCTAGGGCATTGGTGT.................................................. read_312280_106_115_98_24_32_27 MATURE-5P 402 67.34 319 69.05 83 61.48 22
..................GCATCCCCTAGGGCATTGGTG................................................... read_65934_12_7_18_3_5_5 MATURE-5P 50 8.38 37 8.01 13 9.63 21
..................GCATCCCCTAGGGCATTGGTGa.................................................. read_90106_10_11_5_0_0_3 MATURE-5P 29 4.86 26 5.63 3 2.22 a 21
..................GCATCCCCTAGGGCATTGGT.................................................... read_121697_3_3_7_2_3_1 MATURE-5P 19 3.18 13 2.81 6 4.44 20
..................GCATCCCCTAGGGCATTGGTGTt................................................. read_398883_2_0_3_1_1_2 MATURE-5P 9 1.51 5 1.08 4 2.96 t 22
..................GCATCCCCTAGGGaATTGGTGT.................................................. read_22236_3_0_3_0_0_1 MATURE-5P 7 1.17 6 1.30 1 0.74 13A8
..................GCATCCCCTAGGGCATTGG..................................................... read_79576_1_2_0_0_3_0 MATURE-5P 6 1.01 3 0.65 3 2.22 19
..................GCATCCCCTAGGGCATTGGTGTA................................................. read_136638_0_1_2_0_1_0 MATURE-5P 4 0.67 3 0.65 1 0.74 23
..................GCATCCCCTAGGGCATTGtTGT.................................................. read_178415_0_0_1_1_1_0 MATURE-5P 3 0.50 1 0.22 2 1.48 18T3
..................GCATCCCCTAGGGCtTTGGTGT.................................................. read_334054_2_1_0_0_0_0 MATURE-5P 3 0.50 3 0.65 0 0.00 14T7
..................GCATCCCCTAGGGCATTGGTtt.................................................. read_233840_0_1_1_0_0_1 MATURE-5P 3 0.50 2 0.43 1 0.74 tt 20
..................GCATCCCCTAGGGCATTGGcGT.................................................. read_129325_0_1_2_0_0_0 MATURE-5P 3 0.50 3 0.65 0 0.00 19C2
..................GCATCCCCTAGGGCATTGGTGTtt................................................ read_90012_1_0_0_1_1_0 MATURE-5P 3 0.50 1 0.22 2 1.48 tt 22
..................GCATCCCCTAGGGCATTGGTt................................................... read_140353_0_1_1_1_0_0 MATURE-5P 3 0.50 2 0.43 1 0.74 t 20
..................GCATCCCCTAGGGCATTGGTaa.................................................. read_216983_1_1_0_0_0_1 MATURE-5P 3 0.50 2 0.43 1 0.74 aa 20
..................GCATCCCCTAGGGCATTGGTGTAt................................................ read_158730_0_1_0_0_1_0 MATURE-5P 2 0.34 1 0.22 1 0.74 t 23
..................GCATCCCCTAGGGCATTGtTG................................................... read_304833_0_0_2_0_0_0 MATURE-5P 2 0.34 2 0.43 0 0.00 18T2
..................GCATCCCCTAGGGCATTG...................................................... read_335841_0_0_1_1_0_0 MATURE-5P 2 0.34 1 0.22 1 0.74 18
..................GCATCCCCTAGGGCcTTGGTGT.................................................. read_81772_1_0_1_0_0_0 MATURE-5P 2 0.34 2 0.43 0 0.00 14C7
..................GCATCaCCTAGGGCATTGGTGT.................................................. read_33629_0_0_2_0_0_0 MATURE-5P 2 0.34 2 0.43 0 0.00 5A16
..................GCATCCCCTAGGGCATTGGTGc.................................................. read_72437_1_1_0_0_0_0 MATURE-5P 2 0.34 2 0.43 0 0.00 c 21
..................GCATCCCCTAGGGCATTGGTa................................................... read_392099_1_0_0_1_0_0 MATURE-5P 2 0.34 1 0.22 1 0.74 a 20
..................GCgTCCCCTAGGGCATTGGTGT.................................................. read_10351_1_1_0_0_0_0 MATURE-5P 2 0.34 2 0.43 0 0.00 2G19
..................GCATCCCaTAGGGCATTGGTGT.................................................. read_10775_1_1_0_0_0_0 MATURE-5P 2 0.34 2 0.43 0 0.00 7A14
..................aCATCCCCTAGGGCATTGGTGTt................................................. read_303099_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 t 21
..................GCATCCCCTAGGtCATTGGTGT.................................................. read_295311_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 12T9
..................GCATCCCCTAGGGaATTGGTGTt................................................. read_289799_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 t 13A8
..................GCATCCCCTAGGGCAcTGGTGT.................................................. read_174514_0_0_0_0_0_1 MATURE-5P 1 0.17 0 0.00 1 0.74 15C6
..................GCATCCCCTAGGGCATTGGTagt................................................. read_408108_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 agt 20
..................GCATaCCCTAGGGCATTGGTGTt................................................. read_250231_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 t 4A17
..................GCATCCCCTAGGGCAaTGGTG................................................... read_353758_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 15A5
..................GCATCCCCTAGGGCATTGGTGTta................................................ read_232124_1_0_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 ta 22
..................GCATCCCCTAGGGCATTGGTGg.................................................. read_391791_0_0_0_0_0_1 MATURE-5P 1 0.17 0 0.00 1 0.74 g 21
..................GCATCCCCTAGGGCATTtGTGT.................................................. read_103268_0_0_0_1_0_0 MATURE-5P 1 0.17 0 0.00 1 0.74 17T4
..................GCATCCCCTAGGGCcTTGGTGTt................................................. read_346429_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 t 14C7
..................GCATCCCCTAGGGCATTGc..................................................... read_276562_0_0_0_0_0_1 MATURE-5P 1 0.17 0 0.00 1 0.74 c 18
..................GCATCCCCTAGGGCgTTGGT.................................................... read_97934_1_0_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 14G5
..................tCATCCCCTAGGGCATTGGTGT.................................................. read_27400_0_0_0_0_1_0 MATURE-5P 1 0.17 0 0.00 1 0.74 21
..................GCATCCCCTAGGGCATTGGTGTgAA............................................... read_400182_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 22G2
..................GCATCCCCTAGGGCATTGGaGT.................................................. read_63424_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 19A2
..................GCATCCCCTAGGGCATTGGa.................................................... read_279924_0_0_0_1_0_0 MATURE-5P 1 0.17 0 0.00 1 0.74 a 19
..................GCATCCCCTAGGGCATTGtt.................................................... read_77922_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 tt 18
..................GCATCCCCTAGGGCATTGGTGTAAA............................................... read_137677_0_0_0_1_0_0 MATURE-5P 1 0.17 0 0.00 1 0.74 25
..................GCATCCCCTAGGGCATTGGcat.................................................. read_318268_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 cat 19
..................cCATCCCCTAGGGCATTGGTGTA................................................. read_261714_0_1_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 22
..................GCATCCCCTAGGGCATTGGTat.................................................. read_318404_1_0_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 at 20
..................GCATCCCCTAGGGCATTGGgg................................................... read_262574_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 gg 19
..................GCATCCCCTAGGGCATTGGTGatt................................................ read_318398_1_0_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 att 21
..................GCAcCCCCTAGGGCATTGGTGT.................................................. read_202444_0_0_0_0_1_0 MATURE-5P 1 0.17 0 0.00 1 0.74 3C18
..................GCATCCCCTAGGGCgTTGGTGT.................................................. read_353814_0_0_0_1_0_0 MATURE-5P 1 0.17 0 0.00 1 0.74 14G7
..................GCATCCCCTAGGGCATTGGata.................................................. read_85802_0_0_0_1_0_0 MATURE-5P 1 0.17 0 0.00 1 0.74 ata 19
..................GCATCCCCTAGGGtATTGGT.................................................... read_293982_1_0_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 13T6
..................GCATCCCCTAGGGCATTGGTGaa................................................. read_93324_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 aa 21
..................GCATCCCCTAGGGCATT....................................................... read_160160_0_0_0_0_1_0 MATURE-5P 1 0.17 0 0.00 1 0.74 17
..................GCATCCCCTAGGGCATTGtTGa.................................................. read_105110_0_0_1_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 a 18T2
..................aCATCCCCTAGGGCATTGGTGT.................................................. read_330463_1_0_0_0_0_0 MATURE-5P 1 0.17 1 0.22 0 0.00 21
---------- ---------- ----------
597 462 135
(77.39) (22.61)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 121 94 215 26.48%
MATURE-5P 462 135 597 73.52%
---------- ---------- ----------
583 229 812
[END]