[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-31
DESCRIPTION : mmu-mir-31 MI0000579 Mus musculus miR-31 stem-loop
CHROMOSOME : 4
SPAN : 88556461 - 88556566
LENGTH : 106
SEQUENCE : TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-31
ACCID : MI0000579
PARENT : mmu-mir-31
CHROMOSOME : 4
START : 88556461
STOP : 88556566
OFFSET : 28..49
SEQUENCE : AGGCAAGATGCTGGCATAGCTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-31*
ACCID : MI0000579
PARENT : mmu-mir-31
CHROMOSOME : 4
START : 88556461
STOP : 88556566
OFFSET : 64..86
SEQUENCE : TGCTATGCCAACATATTGCCATC
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________________________________
TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT REF 4 88556461 - 88556566
AGGCAAGATGCTGGCATAGCTG MATURE 4 88556489 - 88556615 mmu-miR-31 -
TGCTATGCCAACATATTGCCATC MATURESTAR 4 88556525 - 88556652 mmu-miR-31* -
__________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................GGCAAGATGtTGGCATAGCTGa......................................................... read_121126_0_0_1_2_8_2 MATURE 13 30.95 1 6.25 12 46.15 a 9T11
............................GGCAAGATGCTGGCATAGCTGT......................................................... read_265033_2_1_2_3_2_0 MATURE 10 23.81 5 31.25 5 19.23 22
............................GGCAAGATGCTGGCATAGCT........................................................... read_129679_3_0_1_0_1_1 MATURE 6 14.29 4 25.00 2 7.69 20
............................GGCAAGATGCTGGCATAGCTG.......................................................... read_251861_0_2_1_0_1_1 MATURE 5 11.90 3 18.75 2 7.69 21
............................GGCAAGATGCTGGCATAGCTGa......................................................... read_88139_0_0_1_1_0_0 MATURE 2 4.76 1 6.25 1 3.85 a 21
............................GGCAAGATGCTGGCATA.............................................................. read_271326_0_0_0_0_0_1 MATURE 1 2.38 0 0.00 1 3.85 17
............................GGCAAGATGCTGGCATAGCTa.......................................................... read_304591_1_0_0_0_0_0 MATURE 1 2.38 1 6.25 0 0.00 a 20
............................GGCAAGtTGCTGGCATAGCTGT......................................................... read_64908_0_0_0_1_0_0 MATURE 1 2.38 0 0.00 1 3.85 6T15
............................GGCAAGATGCTGGCATAGCTGTT........................................................ read_156952_0_0_0_0_1_0 MATURE 1 2.38 0 0.00 1 3.85 23
............................GGCAAGATGtTGGCATAGCTG.......................................................... read_132269_0_0_0_0_0_1 MATURE 1 2.38 0 0.00 1 3.85 9T11
............................GGCAAGATGCTGGCATAGCTt.......................................................... read_156621_0_1_0_0_0_0 MATURE 1 2.38 1 6.25 0 0.00 t 20
---------- ---------- ----------
42 16 26
(38.10) (61.90)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 16 26 42 100.00%
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16 26 42
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