[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************
ID                 : mmu-mir-30a
DESCRIPTION        : mmu-mir-30a MI0000144 Mus musculus miR-30a stem-loop
CHROMOSOME         : 1
SPAN               : 23279108 - 23279178
LENGTH             : 71
SEQUENCE           : GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC
OVERHANG THRESHOLD : 75%
********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-30a
ACCID      : MI0000144
PARENT     : mmu-mir-30a
CHROMOSOME : 1
START      : 23279108
STOP       : 23279178
OFFSET     : 6..27
SEQUENCE   : TGTAAACATCCTCGACTGGAAG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-30a*
ACCID      : MI0000144
PARENT     : mmu-mir-30a
CHROMOSOME : 1
START      : 23279108
STOP       : 23279178
OFFSET     : 47..68
SEQUENCE   : CTTTCAGTCGGATGTTTGCAGC
STRAND     : +
******************************



*** MATURE ***
_______________________________________________________________________
GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC REF                  1                    23279108 - 23279178  
     TGTAAACATCCTCGACTGGAAG                                             MATURE               1                    23279114 - 23279205  mmu-miR-30a          +                    
                                              CTTTCAGTCGGATGTTTGCAGC    MATURESTAR           1                    23279155 - 23279246  mmu-miR-30a*         +                    
_______________________________________________________________________

                                                                   -SEQ-                          -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......GTAAACATCCTCGACTGGAAGC............................................   read_374151_35_46_47_10_10_18       MATURE          166        28.38          128        28.19           38        29.01                        22   
......GTAAACATCCTCGACTGGAAG.............................................      read_74518_17_42_16_8_5_14       MATURE          102        17.44           75        16.52           27        20.61                        21   
......GTAAACATCCTCGACTGGAAGCT...........................................       read_75308_21_22_23_9_3_6       MATURE           84        14.36           66        14.54           18        13.74                        23   
......GTAAACATCCTCGACTGGAA..............................................       read_40143_17_12_18_7_3_9       MATURE           66        11.28           47        10.35           19        14.50                        20   
......GTAAACATCCTCGACTGGAAa.............................................           read_3199_9_9_6_1_4_0       MATURE           29         4.96           24         5.29            5         3.82            a           20   
......GTAAACATCCTCGACTGG................................................         read_18778_4_10_5_0_0_1       MATURE           20         3.42           19         4.19            1         0.76                        18   
......GTAAACATCCTCGACTGGA...............................................          read_34323_5_4_4_2_2_1       MATURE           18         3.08           13         2.86            5         3.82                        19   
......GTAAACATCCTCGACTGGAAGt............................................         read_258537_3_3_6_1_0_1       MATURE           14         2.39           12         2.64            2         1.53            t           21   
......GTAAACATCCTCGACTGGAAGCTt..........................................          read_96414_5_1_3_0_0_1       MATURE           10         1.71            9         1.98            1         0.76            t           23   
......GTAAACATCCTCGACTGGAAt.............................................          read_28109_1_1_0_1_0_1       MATURE            4         0.68            2         0.44            2         1.53            t           20   
......GTAAACATCCTCGACTGGca..............................................         read_124943_1_3_0_0_0_0       MATURE            4         0.68            4         0.88            0         0.00           ca           18   
......GTAAACATCCTCGAaTGGAAG.............................................         read_192067_1_0_2_0_0_0       MATURE            3         0.51            3         0.66            0         0.00                      14A6   
......GTAAACATCCTCGACTGGAcGC............................................         read_372482_0_1_1_1_0_0       MATURE            3         0.51            2         0.44            1         0.76                      19C2   
......GTAAACATCCTCGACTGGAAGCa...........................................          read_51768_2_1_0_0_0_0       MATURE            3         0.51            3         0.66            0         0.00            a           22   
......GTAAACATCCaCGACTGGAAGCT...........................................         read_411871_0_0_1_1_1_0       MATURE            3         0.51            1         0.22            2         1.53                     10A12   
......GTAAACATCCTCGAaTGGAAGCT...........................................         read_304063_1_1_0_0_0_0       MATURE            2         0.34            2         0.44            0         0.00                      14A8   
......GTAAACATCCTCtACTGGAAG.............................................         read_374181_1_0_1_0_0_0       MATURE            2         0.34            2         0.44            0         0.00                      12T8   
......GTAAACATCCTCGACTGGAAGCTa..........................................         read_260630_1_1_0_0_0_0       MATURE            2         0.34            2         0.44            0         0.00            a           23   
......GTAAACATCCTCGcCTGGAA..............................................         read_220217_1_0_0_0_1_0       MATURE            2         0.34            1         0.22            1         0.76                      13C6   
......GTAAACATCCTCGAaTGGAAGC............................................         read_202351_0_1_1_0_0_0       MATURE            2         0.34            2         0.44            0         0.00                      14A7   
......GTAAACATCCTCGACTGGAAGat...........................................         read_315614_0_2_0_0_0_0       MATURE            2         0.34            2         0.44            0         0.00           at           21   
......GTAAACATCCTCGACTGGAAtCT...........................................         read_200686_0_0_2_0_0_0       MATURE            2         0.34            2         0.44            0         0.00                      20T2   
......GTAAACATCCTCGACTGGAg..............................................         read_369775_0_2_0_0_0_0       MATURE            2         0.34            2         0.44            0         0.00            g           19   
......GTAAACATCCTCtACTGGAA..............................................          read_38014_0_2_0_0_0_0       MATURE            2         0.34            2         0.44            0         0.00                      12T7   
......GTAAACATCCaCGACTGGAAGC............................................         read_130529_0_1_1_0_0_0       MATURE            2         0.34            2         0.44            0         0.00                     10A11   
......GTAAACATCCTCGACTGGAAGCTtt.........................................          read_30126_0_1_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           tt           23   
......GTAAACATCCTCGACTGGAAGta...........................................         read_283219_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           ta           21   
......GTAAACATCCTCGACTGGAAtc............................................          read_73905_0_0_0_0_1_0       MATURE            1         0.17            0         0.00            1         0.76           tc           20   
......GTAAACATCCTCGAtTGGAAG.............................................          read_88943_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      14T6   
......GTAAACATCCTCGcCTGGAAGCT...........................................         read_234399_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      13C9   
......GTAAACATCCTCGACTGtAAGC............................................         read_172745_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      17T4   
.......TAAACATCCTCGACTGGAAG.............................................          read_34398_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                        20   
......GTAAACATCCTCtACTGGAAGC............................................          read_81027_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      12T9   
......GTAAACATCCTCGACTGGtAGCT...........................................         read_328030_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      18T4   
......GTAAACATCCTCGACTGGAAGCTat.........................................          read_35680_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           at           23   
......GTAAACATCCTaGACTGGAAGC............................................         read_102830_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                     11A10   
......GTAAACATCCTCGACTGGAAGaa...........................................         read_234229_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           aa           21   
......GTAAACATCCTCGACTGGAAaa............................................         read_315016_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           aa           20   
......GTAAACATCCgCGACTGGAAGC............................................         read_141532_0_0_0_1_0_0       MATURE            1         0.17            0         0.00            1         0.76                     10G11   
......GTAAACATCCTCGACTGGtAG.............................................         read_260445_0_0_0_0_1_0       MATURE            1         0.17            0         0.00            1         0.76                      18T2   
.....TGTAAACATCCTaGACTGGAA..............................................          read_36991_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      12A8   
......GTAAACATCCTCGACTGGcAGC............................................         read_333507_0_0_0_0_1_0       MATURE            1         0.17            0         0.00            1         0.76                      18C3   
......GTAAACATCCTCGACTGGAcg.............................................         read_173685_0_0_0_0_1_0       MATURE            1         0.17            0         0.00            1         0.76           cg           19   
............ATCCTCGACTGGAAGCT...........................................          read_72604_0_0_0_0_0_1       MATURE            1         0.17            0         0.00            1         0.76                        17   
......GTAAACATCCTCGAaTGGAA..............................................         read_319685_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      14A5   
......GTAAACATCCTCGACgGGAAGCT...........................................          read_18264_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      15G7   
......GTAAACATCCTCGACTGGAAGgt...........................................         read_246965_0_0_0_1_0_0       MATURE            1         0.17            0         0.00            1         0.76           gt           21   
......GTAAACATCCTCGAgTGGAAGC............................................         read_321355_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      14G7   
......GTAAACATCCTCGACTGGAAGtt...........................................         read_333814_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           tt           21   
......GTAAACATCCTCGACTGGAAcgt...........................................         read_218471_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00          cgt           20   
......GTAAACATCCTCGACTaGAAGCT...........................................         read_349372_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      16A6   
......GTAAACATCCTCGACTGGAAGa............................................         read_103741_1_0_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00            a           21   
......GTAAACATCaTCGACTGGAA..............................................          read_89086_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      9A10   
......GTAAACATCCTCGACTGGcAG.............................................          read_17542_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      18C2   
........AAACATCCTCGACTGGAAGCc...........................................          read_64736_0_1_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00            c           20   
......tTAAACATCCTCGACTGGAAG.............................................         read_218624_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                        20   
......GTAAACATCCTCGcCTGGAAGC............................................         read_285695_0_0_0_0_1_0       MATURE            1         0.17            0         0.00            1         0.76                      13C8   
......GTAAACATCCTCGACTGGAAtg............................................         read_185049_0_0_0_0_1_0       MATURE            1         0.17            0         0.00            1         0.76           tg           20   
......GTAAACATCCTCGACTGGAgg.............................................         read_108811_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00           gg           19   
......GTAAgCATCCTCGACTGGAA..............................................         read_325216_0_0_1_0_0_0       MATURE            1         0.17            1         0.22            0         0.00                      4G15   
......GTAAACATCCgCGACTGGAAGt............................................         read_109900_0_1_0_0_0_0       MATURE            1         0.17            1         0.22            0         0.00            t        10G10   
                                                                                                                        ----------                ----------                ----------   
                                                                                                                               585                       454                       131                                          
                                                                                                                                                     (77.61)                   (22.39)                                       




*** MATURESTAR ***
_______________________________________________________________________
GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC REF                  1                    23279108 - 23279178  
     TGTAAACATCCTCGACTGGAAG                                             MATURE               1                    23279114 - 23279205  mmu-miR-30a          +                    
                                              CTTTCAGTCGGATGTTTGCAGC    MATURESTAR           1                    23279155 - 23279246  mmu-miR-30a*         +                    
_______________________________________________________________________

                                                                   -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................TTCAGTCGGATGTTTGCAG.....   read_158011_0_1_1_0_2_1   MATURESTAR            5        38.46            2        25.00            3        60.00                        19   
................................................TTCAGTCGGATGTTTGCAGt....   read_354046_1_0_1_0_0_0   MATURESTAR            2        15.38            2        25.00            0         0.00            t           19   
................................................TTCAGTCGGATGTTTGCAa.....    read_15319_1_0_0_0_0_1   MATURESTAR            2        15.38            1        12.50            1        20.00            a           18   
................................................TTCAGTCGGATGTTTGCAGtt...   read_134162_0_0_0_0_0_1   MATURESTAR            1         7.69            0         0.00            1        20.00           tt           19   
................................................TTCAGTCGGATGTTTGCAGCTat.   read_223840_0_0_1_0_0_0   MATURESTAR            1         7.69            1        12.50            0         0.00           at           21   
................................................TTCAGTCGGATGTTTGCAGC....   read_276615_0_1_0_0_0_0   MATURESTAR            1         7.69            1        12.50            0         0.00                        20   
................................................TTCAGTCGGATGTTTGCAGta...   read_137863_0_0_1_0_0_0   MATURESTAR            1         7.69            1        12.50            0         0.00           ta           19   
                                                                                                                  ----------                ----------                ----------   
                                                                                                                          13                         8                         5                                          
                                                                                                                                               (61.54)                   (38.46)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             454             131             585          97.83%
     MATURESTAR               8               5              13           2.17%
                     ----------      ----------      ----------                
                            462             136             598                



[END]
