[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************
ID : mmu-mir-30a
DESCRIPTION : mmu-mir-30a MI0000144 Mus musculus miR-30a stem-loop
CHROMOSOME : 1
SPAN : 23279108 - 23279178
LENGTH : 71
SEQUENCE : GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC
OVERHANG THRESHOLD : 75%
********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-30a
ACCID : MI0000144
PARENT : mmu-mir-30a
CHROMOSOME : 1
START : 23279108
STOP : 23279178
OFFSET : 6..27
SEQUENCE : TGTAAACATCCTCGACTGGAAG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-30a*
ACCID : MI0000144
PARENT : mmu-mir-30a
CHROMOSOME : 1
START : 23279108
STOP : 23279178
OFFSET : 47..68
SEQUENCE : CTTTCAGTCGGATGTTTGCAGC
STRAND : +
******************************
*** MATURE ***
_______________________________________________________________________
GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC REF 1 23279108 - 23279178
TGTAAACATCCTCGACTGGAAG MATURE 1 23279114 - 23279205 mmu-miR-30a +
CTTTCAGTCGGATGTTTGCAGC MATURESTAR 1 23279155 - 23279246 mmu-miR-30a* +
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......GTAAACATCCTCGACTGGAAGC............................................ read_374151_35_46_47_10_10_18 MATURE 166 28.38 128 28.19 38 29.01 22
......GTAAACATCCTCGACTGGAAG............................................. read_74518_17_42_16_8_5_14 MATURE 102 17.44 75 16.52 27 20.61 21
......GTAAACATCCTCGACTGGAAGCT........................................... read_75308_21_22_23_9_3_6 MATURE 84 14.36 66 14.54 18 13.74 23
......GTAAACATCCTCGACTGGAA.............................................. read_40143_17_12_18_7_3_9 MATURE 66 11.28 47 10.35 19 14.50 20
......GTAAACATCCTCGACTGGAAa............................................. read_3199_9_9_6_1_4_0 MATURE 29 4.96 24 5.29 5 3.82 a 20
......GTAAACATCCTCGACTGG................................................ read_18778_4_10_5_0_0_1 MATURE 20 3.42 19 4.19 1 0.76 18
......GTAAACATCCTCGACTGGA............................................... read_34323_5_4_4_2_2_1 MATURE 18 3.08 13 2.86 5 3.82 19
......GTAAACATCCTCGACTGGAAGt............................................ read_258537_3_3_6_1_0_1 MATURE 14 2.39 12 2.64 2 1.53 t 21
......GTAAACATCCTCGACTGGAAGCTt.......................................... read_96414_5_1_3_0_0_1 MATURE 10 1.71 9 1.98 1 0.76 t 23
......GTAAACATCCTCGACTGGAAt............................................. read_28109_1_1_0_1_0_1 MATURE 4 0.68 2 0.44 2 1.53 t 20
......GTAAACATCCTCGACTGGca.............................................. read_124943_1_3_0_0_0_0 MATURE 4 0.68 4 0.88 0 0.00 ca 18
......GTAAACATCCTCGAaTGGAAG............................................. read_192067_1_0_2_0_0_0 MATURE 3 0.51 3 0.66 0 0.00 14A6
......GTAAACATCCTCGACTGGAcGC............................................ read_372482_0_1_1_1_0_0 MATURE 3 0.51 2 0.44 1 0.76 19C2
......GTAAACATCCTCGACTGGAAGCa........................................... read_51768_2_1_0_0_0_0 MATURE 3 0.51 3 0.66 0 0.00 a 22
......GTAAACATCCaCGACTGGAAGCT........................................... read_411871_0_0_1_1_1_0 MATURE 3 0.51 1 0.22 2 1.53 10A12
......GTAAACATCCTCGAaTGGAAGCT........................................... read_304063_1_1_0_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 14A8
......GTAAACATCCTCtACTGGAAG............................................. read_374181_1_0_1_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 12T8
......GTAAACATCCTCGACTGGAAGCTa.......................................... read_260630_1_1_0_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 a 23
......GTAAACATCCTCGcCTGGAA.............................................. read_220217_1_0_0_0_1_0 MATURE 2 0.34 1 0.22 1 0.76 13C6
......GTAAACATCCTCGAaTGGAAGC............................................ read_202351_0_1_1_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 14A7
......GTAAACATCCTCGACTGGAAGat........................................... read_315614_0_2_0_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 at 21
......GTAAACATCCTCGACTGGAAtCT........................................... read_200686_0_0_2_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 20T2
......GTAAACATCCTCGACTGGAg.............................................. read_369775_0_2_0_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 g 19
......GTAAACATCCTCtACTGGAA.............................................. read_38014_0_2_0_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 12T7
......GTAAACATCCaCGACTGGAAGC............................................ read_130529_0_1_1_0_0_0 MATURE 2 0.34 2 0.44 0 0.00 10A11
......GTAAACATCCTCGACTGGAAGCTtt......................................... read_30126_0_1_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 tt 23
......GTAAACATCCTCGACTGGAAGta........................................... read_283219_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 ta 21
......GTAAACATCCTCGACTGGAAtc............................................ read_73905_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.76 tc 20
......GTAAACATCCTCGAtTGGAAG............................................. read_88943_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 14T6
......GTAAACATCCTCGcCTGGAAGCT........................................... read_234399_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 13C9
......GTAAACATCCTCGACTGtAAGC............................................ read_172745_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 17T4
.......TAAACATCCTCGACTGGAAG............................................. read_34398_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 20
......GTAAACATCCTCtACTGGAAGC............................................ read_81027_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 12T9
......GTAAACATCCTCGACTGGtAGCT........................................... read_328030_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 18T4
......GTAAACATCCTCGACTGGAAGCTat......................................... read_35680_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 at 23
......GTAAACATCCTaGACTGGAAGC............................................ read_102830_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 11A10
......GTAAACATCCTCGACTGGAAGaa........................................... read_234229_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 aa 21
......GTAAACATCCTCGACTGGAAaa............................................ read_315016_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 aa 20
......GTAAACATCCgCGACTGGAAGC............................................ read_141532_0_0_0_1_0_0 MATURE 1 0.17 0 0.00 1 0.76 10G11
......GTAAACATCCTCGACTGGtAG............................................. read_260445_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.76 18T2
.....TGTAAACATCCTaGACTGGAA.............................................. read_36991_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 12A8
......GTAAACATCCTCGACTGGcAGC............................................ read_333507_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.76 18C3
......GTAAACATCCTCGACTGGAcg............................................. read_173685_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.76 cg 19
............ATCCTCGACTGGAAGCT........................................... read_72604_0_0_0_0_0_1 MATURE 1 0.17 0 0.00 1 0.76 17
......GTAAACATCCTCGAaTGGAA.............................................. read_319685_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 14A5
......GTAAACATCCTCGACgGGAAGCT........................................... read_18264_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 15G7
......GTAAACATCCTCGACTGGAAGgt........................................... read_246965_0_0_0_1_0_0 MATURE 1 0.17 0 0.00 1 0.76 gt 21
......GTAAACATCCTCGAgTGGAAGC............................................ read_321355_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 14G7
......GTAAACATCCTCGACTGGAAGtt........................................... read_333814_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 tt 21
......GTAAACATCCTCGACTGGAAcgt........................................... read_218471_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 cgt 20
......GTAAACATCCTCGACTaGAAGCT........................................... read_349372_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 16A6
......GTAAACATCCTCGACTGGAAGa............................................ read_103741_1_0_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 a 21
......GTAAACATCaTCGACTGGAA.............................................. read_89086_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 9A10
......GTAAACATCCTCGACTGGcAG............................................. read_17542_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 18C2
........AAACATCCTCGACTGGAAGCc........................................... read_64736_0_1_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 c 20
......tTAAACATCCTCGACTGGAAG............................................. read_218624_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 20
......GTAAACATCCTCGcCTGGAAGC............................................ read_285695_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.76 13C8
......GTAAACATCCTCGACTGGAAtg............................................ read_185049_0_0_0_0_1_0 MATURE 1 0.17 0 0.00 1 0.76 tg 20
......GTAAACATCCTCGACTGGAgg............................................. read_108811_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 gg 19
......GTAAgCATCCTCGACTGGAA.............................................. read_325216_0_0_1_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 4G15
......GTAAACATCCgCGACTGGAAGt............................................ read_109900_0_1_0_0_0_0 MATURE 1 0.17 1 0.22 0 0.00 t 10G10
---------- ---------- ----------
585 454 131
(77.61) (22.39)
*** MATURESTAR ***
_______________________________________________________________________
GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC REF 1 23279108 - 23279178
TGTAAACATCCTCGACTGGAAG MATURE 1 23279114 - 23279205 mmu-miR-30a +
CTTTCAGTCGGATGTTTGCAGC MATURESTAR 1 23279155 - 23279246 mmu-miR-30a* +
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................................................TTCAGTCGGATGTTTGCAG..... read_158011_0_1_1_0_2_1 MATURESTAR 5 38.46 2 25.00 3 60.00 19
................................................TTCAGTCGGATGTTTGCAGt.... read_354046_1_0_1_0_0_0 MATURESTAR 2 15.38 2 25.00 0 0.00 t 19
................................................TTCAGTCGGATGTTTGCAa..... read_15319_1_0_0_0_0_1 MATURESTAR 2 15.38 1 12.50 1 20.00 a 18
................................................TTCAGTCGGATGTTTGCAGtt... read_134162_0_0_0_0_0_1 MATURESTAR 1 7.69 0 0.00 1 20.00 tt 19
................................................TTCAGTCGGATGTTTGCAGCTat. read_223840_0_0_1_0_0_0 MATURESTAR 1 7.69 1 12.50 0 0.00 at 21
................................................TTCAGTCGGATGTTTGCAGC.... read_276615_0_1_0_0_0_0 MATURESTAR 1 7.69 1 12.50 0 0.00 20
................................................TTCAGTCGGATGTTTGCAGta... read_137863_0_0_1_0_0_0 MATURESTAR 1 7.69 1 12.50 0 0.00 ta 19
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13 8 5
(61.54) (38.46)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 454 131 585 97.83%
MATURESTAR 8 5 13 2.17%
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462 136 598
[END]