[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************
ID                 : mmu-mir-301a
DESCRIPTION        : mmu-mir-301a MI0000401 Mus musculus miR-301a stem-loop
CHROMOSOME         : 11
SPAN               : 86926506 - 86926591
LENGTH             : 86
SEQUENCE           : CCTGCTAACGGCTGCTCTGACTTTATTGCACTACTGTACTTTACAGCGAGCAGTGCAATAGTATTGTCAAAGCATCCGCGAGCAGG
OVERHANG THRESHOLD : 75%
***********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-301a
ACCID      : MI0000401
PARENT     : mmu-mir-301a
CHROMOSOME : 11
START      : 86926506
STOP       : 86926591
OFFSET     : 51..73
SEQUENCE   : CAGTGCAATAGTATTGTCAAAGC
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________________________
CCTGCTAACGGCTGCTCTGACTTTATTGCACTACTGTACTTTACAGCGAGCAGTGCAATAGTATTGTCAAAGCATCCGCGAGCAGG REF                  11                   86926506 - 86926591  
                                                  CAGTGCAATAGTATTGTCAAAGC              MATURE               11                   86926557 - 86926664  mmu-miR-301a         +                    
______________________________________________________________________________________

                                                                                  -SEQ-                             -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................AGTGCAATAGTATTGTCAAAGC..............        read_374827_46_52_39_6_12_8       MATURE          163        30.99          137        32.62           26        24.53                        22   
...................................................AGTGCAATAGTATTGTCAAAG...............         read_359719_32_37_38_2_4_5       MATURE          118        22.43          107        25.48           11        10.38                        21   
...................................................AGTGCAATAGTATTGTCAAAGCAT............      read_276553_21_30_21_10_10_11       MATURE          103        19.58           72        17.14           31        29.25                        24   
...................................................AGTGCAATAGTATTGTCAAA................            read_220427_7_9_4_4_0_1       MATURE           25         4.75           20         4.76            5         4.72                        20   
...................................................AGTGCAATAGTATTGTCAA.................            read_331416_4_7_2_2_1_2       MATURE           18         3.42           13         3.10            5         4.72                        19   
...................................................AGTGCAATAGTATTGTCAAAGt..............            read_402203_3_5_3_0_0_0       MATURE           11         2.09           11         2.62            0         0.00            t           21   
...................................................AGTGCAATAGTATTaTCAAAGC..............            read_368318_8_0_1_0_0_0       MATURE            9         1.71            9         2.14            0         0.00                      14A7   
...................................................AGTGCAATAGTATTGTC...................             read_23156_1_1_0_2_3_2       MATURE            9         1.71            2         0.48            7         6.60                        17   
...................................................AGTGCAATAGTATTGTCAAAtc..............            read_379108_0_2_2_0_0_2       MATURE            6         1.14            4         0.95            2         1.89           tc           20   
...................................................AGTGCAATAGTATTGTCAAAGa..............            read_131639_0_2_2_0_0_2       MATURE            6         1.14            4         0.95            2         1.89            a           21   
...................................................AGTGCAATAGTATTGTCAAAGCATt...........            read_306998_0_1_1_0_2_1       MATURE            5         0.95            2         0.48            3         2.83            t           24   
...................................................AGTGCAATAGTATTGTCAAAGCt.............             read_77049_1_3_1_0_0_0       MATURE            5         0.95            5         1.19            0         0.00            t           22   
...................................................AGTGCAATAGTATTGTCA..................            read_208996_1_2_0_0_0_0       MATURE            3         0.57            3         0.71            0         0.00                        18   
...................................................AGTGCAATAGTATTtTCAAAGCAT............            read_163184_0_0_2_1_0_0       MATURE            3         0.57            2         0.48            1         0.94                      14T9   
...................................................AGTGCAATAGTATTGTCAt.................             read_58626_0_1_0_1_1_0       MATURE            3         0.57            1         0.24            2         1.89            t           18   
...................................................AGTGCAATAGTATTGTCAAAGCA.............            read_355404_0_1_0_0_0_1       MATURE            2         0.38            1         0.24            1         0.94                        23   
...................................................AGTGCAATAGTATTGTCAAAt...............            read_310184_0_0_1_0_0_1       MATURE            2         0.38            1         0.24            1         0.94            t           20   
...................................................AGTGCAATAGTATTtTCAAAGC..............            read_408922_0_1_1_0_0_0       MATURE            2         0.38            2         0.48            0         0.00                      14T7   
...................................................AGTGCAATAGTATTGTaAAAGC..............            read_184030_1_1_0_0_0_0       MATURE            2         0.38            2         0.48            0         0.00                      16A5   
...................................................AGTGCAATAGTATTGTCAAt................            read_336507_0_1_0_0_0_1       MATURE            2         0.38            1         0.24            1         0.94            t           19   
...................................................AGTGCAATAGTATTGTCAAAGCAa............            read_164696_0_1_0_0_1_0       MATURE            2         0.38            1         0.24            1         0.94            a           23   
...................................................AGTGCAATAGTATTGTCAAAa...............            read_181676_0_0_0_0_0_2       MATURE            2         0.38            0         0.00            2         1.89            a           20   
...................................................AGTGCAATAGTATTGTCAAtg...............             read_73622_0_0_2_0_0_0       MATURE            2         0.38            2         0.48            0         0.00           tg           19   
...................................................AGTGCAATAGTATTGTCAAAac..............             read_29245_0_0_0_0_0_1       MATURE            1         0.19            0         0.00            1         0.94           ac           20   
...................................................AGTGCAATAGcATTGTCAAAGCAT............              read_6151_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                     10C13   
...................................................AGTGCAATAGTATTGTCAAAGCgt............            read_103243_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00           gt           22   
...................................................AGTGCAATAGTATTGTCAAAGCATa...........             read_56362_0_0_0_0_0_1       MATURE            1         0.19            0         0.00            1         0.94            a           24   
...................................................AGTGCAATAGTATTGcCAAAGC..............            read_156086_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      15C6   
...................................................AGTGCAATAGcATTGTCAAAGC..............             read_92106_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                     10C11   
...................................................AGTGCAATAGTATaGTCAAAGC..............            read_345444_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      13A8   
...................................................AGgGCAATAGTATTGTCAAAGCAT............            read_410002_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      2G21   
...................................................AGTGCAATAGTATTGTCAAtGCAT............            read_380752_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      19T4   
...................................................AGTGCAATAGTATTcTCAAAGCAT............            read_221709_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      14C9   
...................................................AGTGCAATAGTATTGTtAAAG...............            read_395658_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      16T4   
...................................................AGTGCAATAGTATTGTCAAAGCg.............            read_401925_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00            g           22   
...................................................AGTGCAATAGTATTGTCAAAGCtt............            read_146383_0_0_1_0_0_0       MATURE            1         0.19            1         0.24            0         0.00           tt           22   
...................................................AGTGCAATAGTATTGTCtAAG...............             read_50154_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      17T3   
...................................................AGTGCAATAGTATTGTCAAAGaAT............            read_327074_0_0_0_0_0_1       MATURE            1         0.19            0         0.00            1         0.94                      21A2   
...................................................AGTGCAATAGTATTGTaAAAGCAT............            read_151176_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      16A7   
...................................................AGTGCAATAGTATTGTCcAAGCt.............            read_251202_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00            t         17C4   
...................................................AGgGCAATAGTATTGTCAAAG...............             read_60658_0_0_0_0_1_0       MATURE            1         0.19            0         0.00            1         0.94                      2G18   
...................................................AGTGCAATAGTATTGTCAtAGCAT............            read_113574_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      18T5   
...................................................AGTGCAATAGTATTaTCAAAG...............            read_168187_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      14A6   
...................................................AGTGCAATAGTATgGTCAAAG...............            read_254538_0_1_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      13G7   
...................................................AGTGCAATAGTATTGTCAAAtCAT............            read_206864_1_0_0_0_0_0       MATURE            1         0.19            1         0.24            0         0.00                      20T3   
...................................................AGTGCgATAGTATTGTCAAAGCAT............            read_134447_0_0_0_0_1_0       MATURE            1         0.19            0         0.00            1         0.94                      5G18   
                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                 526                       420                       106                                          
                                                                                                                                                                       (79.85)                   (20.15)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             420             106             526         100.00%
                     ----------      ----------      ----------                
                            420             106             526                



[END]
