[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-301a
DESCRIPTION : mmu-mir-301a MI0000401 Mus musculus miR-301a stem-loop
CHROMOSOME : 11
SPAN : 86926506 - 86926591
LENGTH : 86
SEQUENCE : CCTGCTAACGGCTGCTCTGACTTTATTGCACTACTGTACTTTACAGCGAGCAGTGCAATAGTATTGTCAAAGCATCCGCGAGCAGG
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-301a
ACCID : MI0000401
PARENT : mmu-mir-301a
CHROMOSOME : 11
START : 86926506
STOP : 86926591
OFFSET : 51..73
SEQUENCE : CAGTGCAATAGTATTGTCAAAGC
STRAND : +
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*** MATURE ***
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CCTGCTAACGGCTGCTCTGACTTTATTGCACTACTGTACTTTACAGCGAGCAGTGCAATAGTATTGTCAAAGCATCCGCGAGCAGG REF 11 86926506 - 86926591
CAGTGCAATAGTATTGTCAAAGC MATURE 11 86926557 - 86926664 mmu-miR-301a +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................AGTGCAATAGTATTGTCAAAGC.............. read_374827_46_52_39_6_12_8 MATURE 163 30.99 137 32.62 26 24.53 22
...................................................AGTGCAATAGTATTGTCAAAG............... read_359719_32_37_38_2_4_5 MATURE 118 22.43 107 25.48 11 10.38 21
...................................................AGTGCAATAGTATTGTCAAAGCAT............ read_276553_21_30_21_10_10_11 MATURE 103 19.58 72 17.14 31 29.25 24
...................................................AGTGCAATAGTATTGTCAAA................ read_220427_7_9_4_4_0_1 MATURE 25 4.75 20 4.76 5 4.72 20
...................................................AGTGCAATAGTATTGTCAA................. read_331416_4_7_2_2_1_2 MATURE 18 3.42 13 3.10 5 4.72 19
...................................................AGTGCAATAGTATTGTCAAAGt.............. read_402203_3_5_3_0_0_0 MATURE 11 2.09 11 2.62 0 0.00 t 21
...................................................AGTGCAATAGTATTaTCAAAGC.............. read_368318_8_0_1_0_0_0 MATURE 9 1.71 9 2.14 0 0.00 14A7
...................................................AGTGCAATAGTATTGTC................... read_23156_1_1_0_2_3_2 MATURE 9 1.71 2 0.48 7 6.60 17
...................................................AGTGCAATAGTATTGTCAAAtc.............. read_379108_0_2_2_0_0_2 MATURE 6 1.14 4 0.95 2 1.89 tc 20
...................................................AGTGCAATAGTATTGTCAAAGa.............. read_131639_0_2_2_0_0_2 MATURE 6 1.14 4 0.95 2 1.89 a 21
...................................................AGTGCAATAGTATTGTCAAAGCATt........... read_306998_0_1_1_0_2_1 MATURE 5 0.95 2 0.48 3 2.83 t 24
...................................................AGTGCAATAGTATTGTCAAAGCt............. read_77049_1_3_1_0_0_0 MATURE 5 0.95 5 1.19 0 0.00 t 22
...................................................AGTGCAATAGTATTGTCA.................. read_208996_1_2_0_0_0_0 MATURE 3 0.57 3 0.71 0 0.00 18
...................................................AGTGCAATAGTATTtTCAAAGCAT............ read_163184_0_0_2_1_0_0 MATURE 3 0.57 2 0.48 1 0.94 14T9
...................................................AGTGCAATAGTATTGTCAt................. read_58626_0_1_0_1_1_0 MATURE 3 0.57 1 0.24 2 1.89 t 18
...................................................AGTGCAATAGTATTGTCAAAGCA............. read_355404_0_1_0_0_0_1 MATURE 2 0.38 1 0.24 1 0.94 23
...................................................AGTGCAATAGTATTGTCAAAt............... read_310184_0_0_1_0_0_1 MATURE 2 0.38 1 0.24 1 0.94 t 20
...................................................AGTGCAATAGTATTtTCAAAGC.............. read_408922_0_1_1_0_0_0 MATURE 2 0.38 2 0.48 0 0.00 14T7
...................................................AGTGCAATAGTATTGTaAAAGC.............. read_184030_1_1_0_0_0_0 MATURE 2 0.38 2 0.48 0 0.00 16A5
...................................................AGTGCAATAGTATTGTCAAt................ read_336507_0_1_0_0_0_1 MATURE 2 0.38 1 0.24 1 0.94 t 19
...................................................AGTGCAATAGTATTGTCAAAGCAa............ read_164696_0_1_0_0_1_0 MATURE 2 0.38 1 0.24 1 0.94 a 23
...................................................AGTGCAATAGTATTGTCAAAa............... read_181676_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 1.89 a 20
...................................................AGTGCAATAGTATTGTCAAtg............... read_73622_0_0_2_0_0_0 MATURE 2 0.38 2 0.48 0 0.00 tg 19
...................................................AGTGCAATAGTATTGTCAAAac.............. read_29245_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.94 ac 20
...................................................AGTGCAATAGcATTGTCAAAGCAT............ read_6151_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 10C13
...................................................AGTGCAATAGTATTGTCAAAGCgt............ read_103243_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 gt 22
...................................................AGTGCAATAGTATTGTCAAAGCATa........... read_56362_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.94 a 24
...................................................AGTGCAATAGTATTGcCAAAGC.............. read_156086_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 15C6
...................................................AGTGCAATAGcATTGTCAAAGC.............. read_92106_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 10C11
...................................................AGTGCAATAGTATaGTCAAAGC.............. read_345444_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 13A8
...................................................AGgGCAATAGTATTGTCAAAGCAT............ read_410002_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 2G21
...................................................AGTGCAATAGTATTGTCAAtGCAT............ read_380752_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 19T4
...................................................AGTGCAATAGTATTcTCAAAGCAT............ read_221709_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 14C9
...................................................AGTGCAATAGTATTGTtAAAG............... read_395658_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 16T4
...................................................AGTGCAATAGTATTGTCAAAGCg............. read_401925_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 g 22
...................................................AGTGCAATAGTATTGTCAAAGCtt............ read_146383_0_0_1_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 tt 22
...................................................AGTGCAATAGTATTGTCtAAG............... read_50154_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 17T3
...................................................AGTGCAATAGTATTGTCAAAGaAT............ read_327074_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.94 21A2
...................................................AGTGCAATAGTATTGTaAAAGCAT............ read_151176_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 16A7
...................................................AGTGCAATAGTATTGTCcAAGCt............. read_251202_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 t 17C4
...................................................AGgGCAATAGTATTGTCAAAG............... read_60658_0_0_0_0_1_0 MATURE 1 0.19 0 0.00 1 0.94 2G18
...................................................AGTGCAATAGTATTGTCAtAGCAT............ read_113574_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 18T5
...................................................AGTGCAATAGTATTaTCAAAG............... read_168187_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 14A6
...................................................AGTGCAATAGTATgGTCAAAG............... read_254538_0_1_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 13G7
...................................................AGTGCAATAGTATTGTCAAAtCAT............ read_206864_1_0_0_0_0_0 MATURE 1 0.19 1 0.24 0 0.00 20T3
...................................................AGTGCgATAGTATTGTCAAAGCAT............ read_134447_0_0_0_0_1_0 MATURE 1 0.19 0 0.00 1 0.94 5G18
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526 420 106
(79.85) (20.15)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 420 106 526 100.00%
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420 106 526
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