[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************
ID                 : mmu-mir-298
DESCRIPTION        : mmu-mir-298 MI0000398 Mus musculus miR-298 stem-loop
CHROMOSOME         : 2
SPAN               : 174093005 - 174093086
LENGTH             : 82
SEQUENCE           : CCAGGCCTTTGGCAGAGGAGGGCTGTTCTTCCCTTGAGTTTTATGACTGGGAGGAACTAGCCTTCTCTCAGCTTAGGAGTGG
OVERHANG THRESHOLD : 75%
*******************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-298
ACCID      : MI0000398
PARENT     : mmu-mir-298
CHROMOSOME : 2
START      : 174093005
STOP       : 174093086
OFFSET     : 11..33
SEQUENCE   : GGCAGAGGAGGGCTGTTCTTCCC
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________________
CCAGGCCTTTGGCAGAGGAGGGCTGTTCTTCCCTTGAGTTTTATGACTGGGAGGAACTAGCCTTCTCTCAGCTTAGGAGTGG REF                  2                    174093005 - 174093086 
          GGCAGAGGAGGGCTGTTCTTCCC                                                  MATURE               2                    174093016 - 174093119 mmu-miR-298          -                    
__________________________________________________________________________________

                                                                              -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........GCAGAGGAGGGCTGTTCTT.....................................................   read_377332_3_2_2_1_1_1       MATURE           10        20.00            7        25.93            3        13.04                        19   
...........GCAGAGGAGGGCTGTTCTTCC...................................................    read_12801_1_1_1_1_2_2       MATURE            8        16.00            3        11.11            5        21.74                        21   
...........GCAGAGGAGGGCTGTTCTTC....................................................   read_208850_1_2_0_1_2_0       MATURE            6        12.00            3        11.11            3        13.04                        20   
...........GCAGAGGAGGGCTGTTCTTCCC..................................................   read_272362_0_1_0_1_2_1       MATURE            5        10.00            1         3.70            4        17.39                        22   
...........GCAGAGGAGGGCTGTTCTTt....................................................   read_306737_0_1_1_0_0_1       MATURE            3         6.00            2         7.41            1         4.35            t           19   
.............AGAGGAGGGCTGTTaTTCCCT.................................................    read_36941_0_0_0_0_0_1       MATURE            1         2.00            0         0.00            1         4.35                      14A6   
...........GCAGAGGAGGGCTGTTCTTaaat.................................................   read_367007_0_1_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00         aaat           19   
...........GCAGAGGAGGGCTGTTCTTCCCc.................................................    read_55736_0_0_0_1_0_0       MATURE            1         2.00            0         0.00            1         4.35            c           22   
...........GCAGAGGAGGGCTGTTCT......................................................    read_43357_0_1_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00                        18   
...........GCAGAGGAGGGCTGTTCTTCCat.................................................    read_11666_1_0_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00           at           21   
...........GCAGAGGAGGGCTGTTCTTtt...................................................    read_53429_1_0_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00           tt           19   
...........GCAGAGGAGGGCTGTTCTTtta..................................................   read_410772_0_1_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00          tta           19   
...........GCAGAGGAGGGCTGTTCTTCatt.................................................   read_187355_1_0_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00          att           20   
...........GCAGAGGAGGGCTGTTCTca....................................................   read_372847_0_1_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00           ca           18   
...........GCAGAGGAGGGCTGTTCTTCa...................................................   read_303677_1_0_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00            a           20   
...........GCAGAGGAGGGCTGTTCTTCCCat................................................   read_150828_0_0_1_0_0_0       MATURE            1         2.00            1         3.70            0         0.00           at           22   
...........GCAGAGGAGGGCcGTTCTTCC...................................................   read_181955_0_0_0_1_0_0       MATURE            1         2.00            0         0.00            1         4.35                      12C8   
...........GCAGAGGAGGGCTGTTCTTCCCaa................................................   read_378840_0_0_0_0_0_1       MATURE            1         2.00            0         0.00            1         4.35           aa           22   
...........GCAGAGGAGGGCTGTTCTTCCCT.................................................   read_275439_0_0_0_0_0_1       MATURE            1         2.00            0         0.00            1         4.35                        23   
...........GCAGAGGAGGGCTGTTCTTa....................................................    read_40158_0_0_0_0_0_1       MATURE            1         2.00            0         0.00            1         4.35            a           19   
...........GCAGAGGAGGGCTGTTCTTCCaa.................................................   read_316878_0_0_1_0_0_0       MATURE            1         2.00            1         3.70            0         0.00           aa           21   
...........GCAGAGGAGGGCTGTTCTTat...................................................   read_134014_0_1_0_0_0_0       MATURE            1         2.00            1         3.70            0         0.00           at           19   
...........GCAGAGGAGGGCTGTTC.......................................................    read_14270_0_0_0_0_1_0       MATURE            1         2.00            0         0.00            1         4.35                        17   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                     50                        27                        23                                          
                                                                                                                                                          (54.00)                   (46.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              27              23              50         100.00%
                     ----------      ----------      ----------                
                             27              23              50                



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