[BEGIN]

REFERENCE HAIRPIN
****************************************************************************************************
ID                 : mmu-mir-296
DESCRIPTION        : mmu-mir-296 MI0000394 Mus musculus miR-296 stem-loop
CHROMOSOME         : 2
SPAN               : 174092548 - 174092626
LENGTH             : 79
SEQUENCE           : GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC
OVERHANG THRESHOLD : 75%
****************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-296-3p
ACCID      : MI0000394
PARENT     : mmu-mir-296
CHROMOSOME : 2
START      : 174092548
STOP       : 174092626
OFFSET     : 47..68
SEQUENCE   : GAGGGTTGGGTGGAGGCTCTCC
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-296-5p
ACCID      : MI0000394
PARENT     : mmu-mir-296
CHROMOSOME : 2
START      : 174092548
STOP       : 174092626
OFFSET     : 13..33
SEQUENCE   : AGGGCCCCCCCTCAATCCTGT
STRAND     : -
******************************



*** MATURE-3P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF                  2                    174092548 - 174092626 
                                              GAGGGTTGGGTGGAGGCTCTCC            MATURE-3P            2                    174092595 - 174092694 mmu-miR-296-3p       -                    
            AGGGCCCCCCCTCAATCCTGT                                               MATURE-5P            2                    174092561 - 174092659 mmu-miR-296-5p       -                    
_______________________________________________________________________________

                                                                           -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................AGGGTTGGGTGGAGGCTCTCC............       read_15728_5_5_2_1_3_5    MATURE-3P           21        27.63           12        28.57            9        26.47                        21   
...............................................AGGGTTGGGTGGAGGCTCT..............      read_189519_2_2_0_2_2_0    MATURE-3P            8        10.53            4         9.52            4        11.76                        19   
...............................................AGGGTTGGGTGGAGGCTCTC.............      read_220411_2_1_1_1_1_2    MATURE-3P            8        10.53            4         9.52            4        11.76                        20   
...............................................AGGGTTGGGTGGAGGCTCTCa............      read_233399_0_0_2_1_1_1    MATURE-3P            5         6.58            2         4.76            3         8.82            a           20   
...............................................AGGGTTGGGTGGAGGCTCTCt............      read_100377_0_1_0_1_1_2    MATURE-3P            5         6.58            1         2.38            4        11.76            t           20   
...............................................AGGGTTGGGTGGAGGCTCTat............       read_51132_1_0_1_0_2_0    MATURE-3P            4         5.26            2         4.76            2         5.88           at           19   
...............................................AGGGTTGGGTGGAGGCTCTCCTt..........      read_216492_2_0_0_1_0_1    MATURE-3P            4         5.26            2         4.76            2         5.88            t           22   
...............................................AGGGTTGGGTGGAGGCTCa..............       read_73161_0_0_1_1_0_0    MATURE-3P            2         2.63            1         2.38            1         2.94            a           18   
...............................................AGGGTTGGGTGGAGGCTCTCCTtt.........      read_103195_2_0_0_0_0_0    MATURE-3P            2         2.63            2         4.76            0         0.00           tt           22   
...............................................AGGGTTGGGTGGAGGCTC...............      read_148823_0_0_0_0_0_2    MATURE-3P            2         2.63            0         0.00            2         5.88                        18   
................................................GGGTTGGGTGGAGGCTCT..............      read_286911_0_0_0_0_1_0    MATURE-3P            1         1.32            0         0.00            1         2.94                        18   
...............................................AGGGTTGGGTGGAGGCT................         read_412_1_0_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00                        17   
................................................GGGTTGGGTGGAGGCTCTCaat..........      read_190952_0_0_1_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00          aat           19   
...............................................AGGGTTGGGTGGAGGCTCTCCaat.........       read_39602_0_1_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00          aat           21   
...............................................AGGGgTGGGTGGAGGCTCTC.............      read_400335_0_0_1_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00                      4G15   
...............................................AGGGTTGGGTGGAGGCTCTCCat..........      read_390451_1_0_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00           at           21   
...............................................AGGGTTGGGTGGAGGCTCTaaa...........      read_326785_0_0_0_1_0_0    MATURE-3P            1         1.32            0         0.00            1         2.94          aaa           19   
...............................................AGGGTTGGGTGGAGGCTCTaa............       read_67933_1_0_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00           aa           19   
................................................GGGTTGGGTGGAGGCTCTC.............      read_200615_1_0_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00                        19   
...............................................AGGGTTGGGTGGAGGCTCTtttt..........       read_32056_0_1_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00         tttt           19   
...............................................AGGGTTGGGTGGAGGCTCTCaa...........      read_150533_0_0_1_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00           aa           20   
................................................GGGTTGGGTGGAGGCTCTCC............      read_347885_0_1_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00                        20   
...............................................AGGGTTGGGTGGAGGCTCTCtaa..........      read_373370_0_0_0_1_0_0    MATURE-3P            1         1.32            0         0.00            1         2.94          taa           20   
...............................................AGGGTTGGGTGGAGGCTCTga............      read_241386_0_0_1_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00           ga           19   
...............................................AGGGTTGGGTGGAGGCTCTCCa...........       read_11341_0_1_0_0_0_0    MATURE-3P            1         1.32            1         2.38            0         0.00            a           21   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                     76                        42                        34                                          
                                                                                                                                                          (55.26)                   (44.74)                                       




*** MATURE-5P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF                  2                    174092548 - 174092626 
                                              GAGGGTTGGGTGGAGGCTCTCC            MATURE-3P            2                    174092595 - 174092694 mmu-miR-296-3p       -                    
            AGGGCCCCCCCTCAATCCTGT                                               MATURE-5P            2                    174092561 - 174092659 mmu-miR-296-5p       -                    
_______________________________________________________________________________

                                                                           -SEQ-                     -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............GGGCCCCCCCTCAATCCTGT...............................................   read_26144_18_9_5_8_7_10    MATURE-5P           57        86.36           32        82.05           25        92.59                        20   
.............GGGCCCCCCCTCAATCCTGTT..............................................    read_197819_0_1_1_1_0_0    MATURE-5P            3         4.55            2         5.13            1         3.70                        21   
.............GGGCCCCCCCTCAATCCTGTTGT............................................     read_76536_0_1_0_0_0_0    MATURE-5P            1         1.52            1         2.56            0         0.00                        23   
.............GGGCCCCCCCTCAATCCTG................................................    read_121069_0_0_1_0_0_0    MATURE-5P            1         1.52            1         2.56            0         0.00                        19   
.............GGGCCCCCCCTCAATCCTtt...............................................      read_3682_1_0_0_0_0_0    MATURE-5P            1         1.52            1         2.56            0         0.00           tt           18   
.............GGGCCCCCCCTCAATCCT.................................................    read_275865_0_0_0_0_0_1    MATURE-5P            1         1.52            0         0.00            1         3.70                        18   
.............GGGCCCCCCCTCAATCCTGc...............................................    read_132638_0_0_1_0_0_0    MATURE-5P            1         1.52            1         2.56            0         0.00            c           19   
.............GGGCCCCCCCTCAcTCCTGT...............................................    read_247346_1_0_0_0_0_0    MATURE-5P            1         1.52            1         2.56            0         0.00                      13C6   
                                                                                                                           ----------                ----------                ----------   
                                                                                                                                   66                        39                        27                                          
                                                                                                                                                        (59.09)                   (40.91)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              42              34              76          53.52%
      MATURE-5P              39              27              66          46.48%
                     ----------      ----------      ----------                
                             81              61             142                



[END]
