[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************************
ID : mmu-mir-296
DESCRIPTION : mmu-mir-296 MI0000394 Mus musculus miR-296 stem-loop
CHROMOSOME : 2
SPAN : 174092548 - 174092626
LENGTH : 79
SEQUENCE : GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC
OVERHANG THRESHOLD : 75%
****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-296-3p
ACCID : MI0000394
PARENT : mmu-mir-296
CHROMOSOME : 2
START : 174092548
STOP : 174092626
OFFSET : 47..68
SEQUENCE : GAGGGTTGGGTGGAGGCTCTCC
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-296-5p
ACCID : MI0000394
PARENT : mmu-mir-296
CHROMOSOME : 2
START : 174092548
STOP : 174092626
OFFSET : 13..33
SEQUENCE : AGGGCCCCCCCTCAATCCTGT
STRAND : -
******************************
*** MATURE-3P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF 2 174092548 - 174092626
GAGGGTTGGGTGGAGGCTCTCC MATURE-3P 2 174092595 - 174092694 mmu-miR-296-3p -
AGGGCCCCCCCTCAATCCTGT MATURE-5P 2 174092561 - 174092659 mmu-miR-296-5p -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................AGGGTTGGGTGGAGGCTCTCC............ read_15728_5_5_2_1_3_5 MATURE-3P 21 27.63 12 28.57 9 26.47 21
...............................................AGGGTTGGGTGGAGGCTCT.............. read_189519_2_2_0_2_2_0 MATURE-3P 8 10.53 4 9.52 4 11.76 19
...............................................AGGGTTGGGTGGAGGCTCTC............. read_220411_2_1_1_1_1_2 MATURE-3P 8 10.53 4 9.52 4 11.76 20
...............................................AGGGTTGGGTGGAGGCTCTCa............ read_233399_0_0_2_1_1_1 MATURE-3P 5 6.58 2 4.76 3 8.82 a 20
...............................................AGGGTTGGGTGGAGGCTCTCt............ read_100377_0_1_0_1_1_2 MATURE-3P 5 6.58 1 2.38 4 11.76 t 20
...............................................AGGGTTGGGTGGAGGCTCTat............ read_51132_1_0_1_0_2_0 MATURE-3P 4 5.26 2 4.76 2 5.88 at 19
...............................................AGGGTTGGGTGGAGGCTCTCCTt.......... read_216492_2_0_0_1_0_1 MATURE-3P 4 5.26 2 4.76 2 5.88 t 22
...............................................AGGGTTGGGTGGAGGCTCa.............. read_73161_0_0_1_1_0_0 MATURE-3P 2 2.63 1 2.38 1 2.94 a 18
...............................................AGGGTTGGGTGGAGGCTCTCCTtt......... read_103195_2_0_0_0_0_0 MATURE-3P 2 2.63 2 4.76 0 0.00 tt 22
...............................................AGGGTTGGGTGGAGGCTC............... read_148823_0_0_0_0_0_2 MATURE-3P 2 2.63 0 0.00 2 5.88 18
................................................GGGTTGGGTGGAGGCTCT.............. read_286911_0_0_0_0_1_0 MATURE-3P 1 1.32 0 0.00 1 2.94 18
...............................................AGGGTTGGGTGGAGGCT................ read_412_1_0_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 17
................................................GGGTTGGGTGGAGGCTCTCaat.......... read_190952_0_0_1_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 aat 19
...............................................AGGGTTGGGTGGAGGCTCTCCaat......... read_39602_0_1_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 aat 21
...............................................AGGGgTGGGTGGAGGCTCTC............. read_400335_0_0_1_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 4G15
...............................................AGGGTTGGGTGGAGGCTCTCCat.......... read_390451_1_0_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 at 21
...............................................AGGGTTGGGTGGAGGCTCTaaa........... read_326785_0_0_0_1_0_0 MATURE-3P 1 1.32 0 0.00 1 2.94 aaa 19
...............................................AGGGTTGGGTGGAGGCTCTaa............ read_67933_1_0_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 aa 19
................................................GGGTTGGGTGGAGGCTCTC............. read_200615_1_0_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 19
...............................................AGGGTTGGGTGGAGGCTCTtttt.......... read_32056_0_1_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 tttt 19
...............................................AGGGTTGGGTGGAGGCTCTCaa........... read_150533_0_0_1_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 aa 20
................................................GGGTTGGGTGGAGGCTCTCC............ read_347885_0_1_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 20
...............................................AGGGTTGGGTGGAGGCTCTCtaa.......... read_373370_0_0_0_1_0_0 MATURE-3P 1 1.32 0 0.00 1 2.94 taa 20
...............................................AGGGTTGGGTGGAGGCTCTga............ read_241386_0_0_1_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 ga 19
...............................................AGGGTTGGGTGGAGGCTCTCCa........... read_11341_0_1_0_0_0_0 MATURE-3P 1 1.32 1 2.38 0 0.00 a 21
---------- ---------- ----------
76 42 34
(55.26) (44.74)
*** MATURE-5P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF 2 174092548 - 174092626
GAGGGTTGGGTGGAGGCTCTCC MATURE-3P 2 174092595 - 174092694 mmu-miR-296-3p -
AGGGCCCCCCCTCAATCCTGT MATURE-5P 2 174092561 - 174092659 mmu-miR-296-5p -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............GGGCCCCCCCTCAATCCTGT............................................... read_26144_18_9_5_8_7_10 MATURE-5P 57 86.36 32 82.05 25 92.59 20
.............GGGCCCCCCCTCAATCCTGTT.............................................. read_197819_0_1_1_1_0_0 MATURE-5P 3 4.55 2 5.13 1 3.70 21
.............GGGCCCCCCCTCAATCCTGTTGT............................................ read_76536_0_1_0_0_0_0 MATURE-5P 1 1.52 1 2.56 0 0.00 23
.............GGGCCCCCCCTCAATCCTG................................................ read_121069_0_0_1_0_0_0 MATURE-5P 1 1.52 1 2.56 0 0.00 19
.............GGGCCCCCCCTCAATCCTtt............................................... read_3682_1_0_0_0_0_0 MATURE-5P 1 1.52 1 2.56 0 0.00 tt 18
.............GGGCCCCCCCTCAATCCT................................................. read_275865_0_0_0_0_0_1 MATURE-5P 1 1.52 0 0.00 1 3.70 18
.............GGGCCCCCCCTCAATCCTGc............................................... read_132638_0_0_1_0_0_0 MATURE-5P 1 1.52 1 2.56 0 0.00 c 19
.............GGGCCCCCCCTCAcTCCTGT............................................... read_247346_1_0_0_0_0_0 MATURE-5P 1 1.52 1 2.56 0 0.00 13C6
---------- ---------- ----------
66 39 27
(59.09) (40.91)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 42 34 76 53.52%
MATURE-5P 39 27 66 46.48%
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81 61 142
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