[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-23b
DESCRIPTION : mmu-mir-23b MI0000141 Mus musculus miR-23b stem-loop
CHROMOSOME : 13
SPAN : 63401792 - 63401865
LENGTH : 74
SEQUENCE : GGCTGCTTGGGTTCCTGGCATGCTGATTTGTGACTTGAGATTAAAATCACATTGCCAGGGATTACCACGCAACC
OVERHANG THRESHOLD : 75%
***********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-23b
ACCID : MI0000141
PARENT : mmu-mir-23b
CHROMOSOME : 13
START : 63401792
STOP : 63401865
OFFSET : 46..66
SEQUENCE : ATCACATTGCCAGGGATTACC
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________
GGCTGCTTGGGTTCCTGGCATGCTGATTTGTGACTTGAGATTAAAATCACATTGCCAGGGATTACCACGCAACC REF 13 63401792 - 63401865
ATCACATTGCCAGGGATTACC MATURE 13 63401838 - 63401931 mmu-miR-23b +
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................CACATTGCCAGGGATTACCACt...... read_167269_17_18_8_4_5_9 MATURE 61 40.67 43 40.95 18 40.00 t 21
...............................................CACATTGCCAGGGATTACCA........ read_393299_2_4_2_0_2_0 MATURE 10 6.67 8 7.62 2 4.44 20
...............................................CACATTGCCAGGGATTACCAt....... read_168445_1_0_4_0_1_1 MATURE 7 4.67 5 4.76 2 4.44 t 20
...............................................CACATTGCCAGGGATTACCACtt..... read_5338_0_2_1_1_1_2 MATURE 7 4.67 3 2.86 4 8.89 tt 21
...............................................CACATTGCCAGGGATTAC.......... read_359428_4_1_1_1_0_0 MATURE 7 4.67 6 5.71 1 2.22 18
...............................................CACATTGCCAGGGATTACC......... read_100993_2_0_2_1_0_0 MATURE 5 3.33 4 3.81 1 2.22 19
...............................................CACATTGCCAGGGATTACa......... read_345622_0_2_1_0_0_2 MATURE 5 3.33 3 2.86 2 4.44 a 18
...............................................CACATTGCCAGGGATTACCAC....... read_187918_0_3_0_0_0_1 MATURE 4 2.67 3 2.86 1 2.22 21
...............................................CACATTGCCAGGGATTACCACtg..... read_295275_1_1_1_0_0_0 MATURE 3 2.00 3 2.86 0 0.00 tg 21
.............................................ATCACATTGCCAGGGATT............ read_140620_1_0_0_0_2_0 MATURE 3 2.00 1 0.95 2 4.44 18
.............................................ATCACATTGCCAGGGATTACC......... read_44352_1_0_1_0_0_0 MATURE 2 1.33 2 1.90 0 0.00 21
...............................................CACATTGCCAGGGATTACCACttt.... read_330111_2_0_0_0_0_0 MATURE 2 1.33 2 1.90 0 0.00 ttt 21
...............................................CACATTGCCAGGGATTACCACa...... read_84724_0_2_0_0_0_0 MATURE 2 1.33 2 1.90 0 0.00 a 21
.............................................ATCACATTGCCAGGGATTttaa........ read_325290_0_1_1_0_0_0 MATURE 2 1.33 2 1.90 0 0.00 ttaa 18
...............................................CACATTGCCAGGGATTACt......... read_52928_0_1_1_0_0_0 MATURE 2 1.33 2 1.90 0 0.00 t 18
...............................................CACATTGCCAGGGATTA........... read_367483_0_0_0_0_2_0 MATURE 2 1.33 0 0.00 2 4.44 17
.................................................CATTGCCAGGGATTACCA........ read_19079_0_1_1_0_0_0 MATURE 2 1.33 2 1.90 0 0.00 18
...............................................CACATTGCCAGGGATTACCAtt...... read_129341_0_1_0_0_0_1 MATURE 2 1.33 1 0.95 1 2.22 tt 20
.............................................ATCACATTGCCAGGGATTcCCA........ read_389245_0_1_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 18C3
...............................................CACATTGCCAGGGAcTACCACt...... read_242427_0_1_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 t 14C6
.............................................ATCACATTGCCAGGGATTAt.......... read_228850_1_0_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 t 19
...............................................CACATTGCCAGGGATTACCACta..... read_311868_0_1_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 ta 21
..............................................TCACATTGCCAGGGATTACCA........ read_222384_0_1_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 21
.............................................ATCACATTGCCAGGGATTtag......... read_371159_0_0_0_0_1_0 MATURE 1 0.67 0 0.00 1 2.22 tag 18
..................................................ATTGCCAGGGATTACCACt...... read_261650_0_0_0_0_0_1 MATURE 1 0.67 0 0.00 1 2.22 t 18
..............................................TCACATTGCCAGGGATTACCAC....... read_383724_0_0_1_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 22
..............................................cCACATTGCCAGGGATTAC.......... read_94770_0_1_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 18
...............................................CACATTGCCAGGGATTACCAta...... read_249997_1_0_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 ta 20
...............................................CACATTGCCAGGGATTACCgct...... read_55733_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.22 gct 19
...............................................CACATTGCCAGGGATTACCAa....... read_205922_1_0_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 a 20
...............................................CACATTGtCAGGGATTACCACt...... read_74526_1_0_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 t 7T13
.................................................CATTGCCAGGGATTACCACt...... read_140561_0_0_0_0_0_1 MATURE 1 0.67 0 0.00 1 2.22 t 19
.............................................ATCACATTGCCAGGGAT............. read_7209_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.22 17
...............................................CACATTGCCAGGGcTTACCACta..... read_273160_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.22 ta 13C7
.............................................ATCACATTGCCAGGGATTAaaaa....... read_101847_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.22 aaaa 19
................................................ACATTGCCAGGGATTACCACt...... read_293109_0_0_0_0_0_1 MATURE 1 0.67 0 0.00 1 2.22 t 20
.............................................ATCACATTGCCAGGGATTAC.......... read_391148_1_0_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 20
.............................................ATCACATTGCCAGGGATTtaa......... read_22593_0_0_0_1_0_0 MATURE 1 0.67 0 0.00 1 2.22 taa 18
...............................................CACATTGCCAGGGATTACCtt....... read_119151_0_1_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 tt 19
...............................................CACATTGCCAGGGgTTACCACt...... read_82462_1_0_0_0_0_0 MATURE 1 0.67 1 0.95 0 0.00 t 13G7
---------- ---------- ----------
150 105 45
(70.00) (30.00)
*** OTHER ***
__________________________________________________________________________
GGCTGCTTGGGTTCCTGGCATGCTGATTTGTGACTTGAGATTAAAATCACATTGCCAGGGATTACCACGCAACC REF 13 63401792 - 63401865
ATCACATTGCCAGGGATTACC MATURE 13 63401838 - 63401931 mmu-miR-23b +
__________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........GGGTTCCTGGCATGCTGAT................................................ read_151206_0_1_0_0_0_0 OTHER 1 50.00 1 100.00 0 0.00 19
.........GGTTCCTGGCATGCTGATT............................................... read_195731_0_0_0_0_1_0 OTHER 1 50.00 0 0.00 1 100.00 19
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2 1 1
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 105 45 150 98.68%
OTHER 1 1 2 1.32%
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106 46 152
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