[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-23a
DESCRIPTION : mmu-mir-23a MI0000571 Mus musculus miR-23a stem-loop
CHROMOSOME : 8
SPAN : 86732417 - 86732491
LENGTH : 75
SEQUENCE : CGGACGGCTGGGGTTCCTGGGGATGGGATTTGATGCCAGTCACAAATCACATTGCCAGGGATTTCCAACTGACCC
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-23a
ACCID : MI0000571
PARENT : mmu-mir-23a
CHROMOSOME : 8
START : 86732417
STOP : 86732491
OFFSET : 46..66
SEQUENCE : ATCACATTGCCAGGGATTTCC
STRAND : +
******************************
*** MATURE ***
___________________________________________________________________________
CGGACGGCTGGGGTTCCTGGGGATGGGATTTGATGCCAGTCACAAATCACATTGCCAGGGATTTCCAACTGACCC REF 8 86732417 - 86732491
ATCACATTGCCAGGGATTTCC MATURE 8 86732463 - 86732557 mmu-miR-23a +
___________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................CACATTGCCAGGGATTTCCA......... read_235631_10_13_11_3_4_2 MATURE 43 12.50 34 14.91 9 7.76 20
.............................................ATCACATTGCCAGGGATTTC........... read_85681_5_8_10_0_0_1 MATURE 24 6.98 23 10.09 1 0.86 20
...............................................CACATTGCCAGGGATTTC........... read_247798_5_8_4_2_4_1 MATURE 24 6.98 17 7.46 7 6.03 18
...............................................CACATTGCCAGGGATTTCCAAt....... read_377340_3_3_9_1_1_4 MATURE 21 6.10 15 6.58 6 5.17 t 21
.............................................ATCACATTGCCAGGGATTTCCA......... read_248692_3_6_4_2_2_3 MATURE 20 5.81 13 5.70 7 6.03 22
.................................................CATTGCCAGGGATTTCCA......... read_91934_2_0_1_2_7_7 MATURE 19 5.52 3 1.32 16 13.79 18
...............................................CACATTGCCAGGGATTTCCAA........ read_69427_5_4_3_0_3_2 MATURE 17 4.94 12 5.26 5 4.31 21
...............................................CACATTGCCAGGGATTTCCAt........ read_264091_4_7_1_1_2_0 MATURE 15 4.36 12 5.26 3 2.59 t 20
..................................................ATTGCCAGGGATTTCCA......... read_146345_3_2_0_0_4_4 MATURE 13 3.78 5 2.19 8 6.90 17
.............................................ATCACATTGCCAGGGATTT............ read_33394_1_2_2_0_3_1 MATURE 9 2.62 5 2.19 4 3.45 19
..............................................TCACATTGCCAGGGATTTCCA......... read_251221_2_2_0_1_0_3 MATURE 8 2.33 4 1.75 4 3.45 21
..............................................cCACATTGCCAGGGATTTCCA......... read_114037_2_2_3_1_0_0 MATURE 8 2.33 7 3.07 1 0.86 20
.................................................CATTGCCAGGGATTTCCAt........ read_285366_1_1_1_1_3_0 MATURE 7 2.03 3 1.32 4 3.45 t 18
.................................................CATTGCCAGGGATTTCCAA........ read_78792_0_0_1_3_1_2 MATURE 7 2.03 1 0.44 6 5.17 19
.............................................ATCACATTGCCAGGGATTTCCAt........ read_56838_0_1_2_0_3_0 MATURE 6 1.74 3 1.32 3 2.59 t 22
...............................................CACATTGCCAGGGATTTCt.......... read_360912_1_2_1_0_0_1 MATURE 5 1.45 4 1.75 1 0.86 t 18
...............................................CACATTGCCAGGGATTTCaa......... read_144311_2_0_2_0_0_0 MATURE 4 1.16 4 1.75 0 0.00 aa 18
.............................................ATCACATTGCCAGGGATTTCC.......... read_307144_1_0_3_0_0_0 MATURE 4 1.16 4 1.75 0 0.00 21
.............................................ATCACATTGCCAGGGATTTCa.......... read_401594_0_2_1_0_0_1 MATURE 4 1.16 3 1.32 1 0.86 a 20
...............................................CACATTGCCAGGGATTTCC.......... read_80491_2_0_1_0_1_0 MATURE 4 1.16 3 1.32 1 0.86 19
..............................................cCACATTGCCAGGGATTTCCAt........ read_94280_2_1_0_0_1_0 MATURE 4 1.16 3 1.32 1 0.86 t 20
..............................................cCACATTGCCAGGGATTTC........... read_143572_1_1_0_0_1_1 MATURE 4 1.16 2 0.88 2 1.72 18
................................................ACATTGCCAGGGATTTCCA......... read_46439_0_2_0_1_0_0 MATURE 3 0.87 2 0.88 1 0.86 19
.................................................CATTGCCAGGGATTTCC.......... read_101780_1_0_1_0_1_0 MATURE 3 0.87 2 0.88 1 0.86 17
...............................................CACATTGCCAGGGATTTCCAtt....... read_127435_0_2_1_0_0_0 MATURE 3 0.87 3 1.32 0 0.00 tt 20
.............................................ATCACATTGCCAGGGATT............. read_140620_1_0_0_0_2_0 MATURE 3 0.87 1 0.44 2 1.72 18
...............................................CACATTGCCAGGGATTT............ read_222393_0_1_0_1_0_1 MATURE 3 0.87 1 0.44 2 1.72 17
...............................................CACATTGCCAGGGATTTCa.......... read_352989_2_1_0_0_0_0 MATURE 3 0.87 3 1.32 0 0.00 a 18
...............................................CACATTGCCAGGGATTTCCAAa....... read_334255_0_2_0_0_0_0 MATURE 2 0.58 2 0.88 0 0.00 a 21
................................................ACATTGCCAGGGATTTCCAAt....... read_140679_0_0_0_0_2_0 MATURE 2 0.58 0 0.00 2 1.72 t 20
...............................................CACATTGCCAGGGATTTCCt......... read_313469_0_1_1_0_0_0 MATURE 2 0.58 2 0.88 0 0.00 t 19
.............................................ATCACATTGCCAGGGATTTCCAA........ read_218828_0_1_0_0_1_0 MATURE 2 0.58 1 0.44 1 0.86 23
................................................ACATTGCCAGGGATTTCCAt........ read_205217_0_1_0_0_1_0 MATURE 2 0.58 1 0.44 1 0.86 t 19
.............................................ATCACATTGCCAGGGATTTCCt......... read_229691_1_0_0_0_1_0 MATURE 2 0.58 1 0.44 1 0.86 t 21
..............................................aCACATTGCCAGGGATTTCCAt........ read_286679_1_1_0_0_0_0 MATURE 2 0.58 2 0.88 0 0.00 t 20
.............................................ATCACATTGCCAGGGATTTCCAAt....... read_331845_0_0_2_0_0_0 MATURE 2 0.58 2 0.88 0 0.00 t 23
.............................................ATCACATTGCCAGGGATTTtaa......... read_325290_0_1_1_0_0_0 MATURE 2 0.58 2 0.88 0 0.00 taa 19
..............................................aCACATTGCCAGGGATTTCCA......... read_199540_0_1_0_0_0_1 MATURE 2 0.58 1 0.44 1 0.86 20
...............................................CACATTGCCAGGGATTTCCAg........ read_375325_1_0_0_0_1_0 MATURE 2 0.58 1 0.44 1 0.86 g 20
...............................................CACATTGCCAGGGATTTCCtt........ read_75384_2_0_0_0_0_0 MATURE 2 0.58 2 0.88 0 0.00 tt 19
..................................................ATTGCCAGGGATTTCCAA........ read_243861_0_0_0_1_0_0 MATURE 1 0.29 0 0.00 1 0.86 18
..............................................gCACATTGCCAGGGATTTC........... read_239168_0_0_0_0_0_1 MATURE 1 0.29 0 0.00 1 0.86 18
..............................................TCACATTGCCAGGGATTTaa.......... read_231960_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 aa 18
................................................ACATTGCCAGGGATTTCCAAat...... read_388426_0_0_0_0_1_0 MATURE 1 0.29 0 0.00 1 0.86 at 20
.............................................ATCACATTGCCAGGGATTTCCAAa....... read_220367_0_1_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 a 23
..............................................cCACATTGCCAGGGATTTCCAAt....... read_127007_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 t 21
................................................ACATTGCCAGGGATTTCCt......... read_210124_0_0_0_1_0_0 MATURE 1 0.29 0 0.00 1 0.86 t 18
...............................................CACATTGCCAGGGATTTCCAttt...... read_306918_0_0_1_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 ttt 20
.............................................ATCACATTGCCAGGaATTTCCA......... read_347469_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 14A7
...............................................CACATTGCCAGGGATTTCCtta....... read_228571_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 tta 19
...............................................CACATTGCCAGGtATTTCCA......... read_399033_0_1_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 12T7
.................................................CATTGCCAGGGATTTCCAAt....... read_185061_0_0_0_0_1_0 MATURE 1 0.29 0 0.00 1 0.86 t 19
.............................................ATCACATTGCCAGGGATTTa........... read_117277_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 a 19
.............................................ATCcCATTGCCAGGGATTTCCA......... read_227748_0_0_1_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 3C18
..............................................aCACATTGCCAGGGATTTCt.......... read_14757_0_1_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 t 18
.............................................ATCACATTGCCAGGGATTTag.......... read_371159_0_0_0_0_1_0 MATURE 1 0.29 0 0.00 1 0.86 ag 19
...............................................CACATTGCCAGGGATTTCCtaa....... read_78656_0_0_0_0_1_0 MATURE 1 0.29 0 0.00 1 0.86 taa 19
..............................................TCACATTGCCAGGGATTTC........... read_263078_0_0_0_1_0_0 MATURE 1 0.29 0 0.00 1 0.86 19
...............................................CACATTGCCAGGGATTTCtt......... read_290419_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 tt 18
.............................................ATCACATTGCCAGGGATTTaa.......... read_22593_0_0_0_1_0_0 MATURE 1 0.29 0 0.00 1 0.86 aa 19
.............................................ATCACATTGCCAGGGATTTCt.......... read_114895_0_1_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 t 20
..............................................cCACATTGCCAGGGATTTCC.......... read_253123_0_0_0_0_1_0 MATURE 1 0.29 0 0.00 1 0.86 19
.............................................ATCACATTGCCAtGGATTTCCAAt....... read_310817_0_0_1_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 t 12T10
.............................................ATCACATTGCCAGGGAT.............. read_7209_0_0_0_1_0_0 MATURE 1 0.29 0 0.00 1 0.86 17
.............................................ATCACATTGCCAGGGATTaaaaa........ read_101847_0_0_0_1_0_0 MATURE 1 0.29 0 0.00 1 0.86 aaaaa 18
.............................................ATCACATTGCCAGGGATTTCCg......... read_137860_0_0_1_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 g 21
...............................................CACATTGCCAGGGATTTCCctt....... read_200474_0_0_0_0_1_0 MATURE 1 0.29 0 0.00 1 0.86 ctt 19
.............................................ATCACATTGCCAGGcATTTCCA......... read_36775_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 14C7
.............................................ATCACATTGCCAGGtATTTCCAA........ read_83209_1_0_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 14T8
.............................................ATCACATTGCCAGGGATTcCCA......... read_389245_0_1_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 18C3
.............................................ATCACATTGCCAGGGATTTCaa......... read_103270_0_1_0_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 aa 20
...............................................CACATTGCCAGGGATTTCCAtta...... read_103417_0_0_1_0_0_0 MATURE 1 0.29 1 0.44 0 0.00 tta 20
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344 228 116
(66.28) (33.72)
*** OTHER ***
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CGGACGGCTGGGGTTCCTGGGGATGGGATTTGATGCCAGTCACAAATCACATTGCCAGGGATTTCCAACTGACCC REF 8 86732417 - 86732491
ATCACATTGCCAGGGATTTCC MATURE 8 86732463 - 86732557 mmu-miR-23a +
___________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........GGGTTCCTGGGGATGGGATTT............................................. read_274852_15_6_1_14_6_11 OTHER 53 55.79 22 45.83 31 65.96 21
..........GGGTTCCTGGGGATGGGATT.............................................. read_399022_3_8_3_1_1_3 OTHER 19 20.00 14 29.17 5 10.64 20
..........GGGTTCCTGGGGATGGGATTTt............................................ read_315467_1_1_0_0_3_1 OTHER 6 6.32 2 4.17 4 8.51 t 21
..........GGGTTCCTGGGGATGGGA................................................ read_121119_0_2_0_0_0_1 OTHER 3 3.16 2 4.17 1 2.13 18
..........GGGTTCCTGGGGtTGGGATTT............................................. read_300385_0_1_0_0_0_1 OTHER 2 2.11 1 2.08 1 2.13 12T8
..........GGGTTCCTGGGGATGGGATTTa............................................ read_266069_1_0_0_0_1_0 OTHER 2 2.11 1 2.08 1 2.13 a 21
..........GGGTTCCTGGGGATGGGAT............................................... read_16779_0_2_0_0_0_0 OTHER 2 2.11 2 4.17 0 0.00 19
..........GGGTTCCTGGGGATaGGATTT............................................. read_311977_1_0_0_0_0_0 OTHER 1 1.05 1 2.08 0 0.00 14A6
..............TCCTGGGGATGGGATTT............................................. read_369070_0_0_0_1_0_0 OTHER 1 1.05 0 0.00 1 2.13 17
..........GGGTTCCTGGGGATGGGATTTta........................................... read_70015_0_0_0_0_0_1 OTHER 1 1.05 0 0.00 1 2.13 ta 21
..........GGtTTCCTGGGGATGGGATTT............................................. read_368749_0_0_0_0_0_1 OTHER 1 1.05 0 0.00 1 2.13 2T18
..........GGGTTCCTGGGGATGGGgTTT............................................. read_318939_1_0_0_0_0_0 OTHER 1 1.05 1 2.08 0 0.00 17G3
..........GGGTTCCTGGGGcTGGGATTT............................................. read_37693_0_0_0_0_0_1 OTHER 1 1.05 0 0.00 1 2.13 12C8
..........GGGTTCCTGGGGATGGGgTTTt............................................ read_211598_1_0_0_0_0_0 OTHER 1 1.05 1 2.08 0 0.00 t 17G3
..........GGGTTCCTGGGGATGGGATTTtt........................................... read_25965_0_0_1_0_0_0 OTHER 1 1.05 1 2.08 0 0.00 tt 21
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95 48 47
(50.53) (49.47)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 228 116 344 78.36%
OTHER 48 47 95 21.64%
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276 163 439
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