[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-219-1
DESCRIPTION : mmu-mir-219-1 MI0000702 Mus musculus miR-219-1 stem-loop
CHROMOSOME : 17
SPAN : 34161928 - 34162037
LENGTH : 110
SEQUENCE : CCGTCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCCGGCCGAGAGTTGCGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGG
OVERHANG THRESHOLD : 75%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-219
ACCID : MI0000702
PARENT : mmu-mir-219-1
CHROMOSOME : 17
START : 34161928
STOP : 34162037
OFFSET : 21..41
SEQUENCE : TGATTGTCCAAACGCAATTCT
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________________________________________________
CCGTCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCCGGCCGAGAGTTGCGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGG REF 17 34161928 - 34162037
TGATTGTCCAAACGCAATTCT MATURE 17 34161949 - 34162078 mmu-miR-219 -
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................GATTGTCCAAACGCAATTCTCG.................................................................... read_192939_11_13_17_10_19_13 MATURE 83 76.15 41 74.55 42 77.78 22
.....................GATTGTCCAAACGCAATTCTCGt................................................................... read_403483_1_3_5_1_1_0 MATURE 11 10.09 9 16.36 2 3.70 t 22
.....................GATTGTCCAAACGCAATTCTC..................................................................... read_401083_0_1_1_0_1_1 MATURE 4 3.67 2 3.64 2 3.70 21
.........................GTCCAAACGCAATTCTCG.................................................................... read_110966_0_0_0_0_1_1 MATURE 2 1.83 0 0.00 2 3.70 18
.....................GATTGTCCAAACGCgATTCTCG.................................................................... read_175631_2_0_0_0_0_0 MATURE 2 1.83 2 3.64 0 0.00 14G7
.....................GATTGTCCAAACGCAATTCT...................................................................... read_210851_0_0_0_0_1_1 MATURE 2 1.83 0 0.00 2 3.70 20
.....................GATTGTCCAcACGCAATTCTCG.................................................................... read_326060_0_0_0_1_0_0 MATURE 1 0.92 0 0.00 1 1.85 9C12
.........................GTCCAAACGCAATTCTC..................................................................... read_276743_0_0_0_0_0_1 MATURE 1 0.92 0 0.00 1 1.85 17
.....................GATTGgCCAAACGCAATTCTCG.................................................................... read_384368_0_0_0_0_0_1 MATURE 1 0.92 0 0.00 1 1.85 5G16
......................ATTGTCCAAACGCAATTCTCG.................................................................... read_224918_0_0_0_0_0_1 MATURE 1 0.92 0 0.00 1 1.85 21
.....................GATTGTCCAAACGCAATTCaCG.................................................................... read_264856_0_0_1_0_0_0 MATURE 1 0.92 1 1.82 0 0.00 19A2
---------- ---------- ----------
109 55 54
(50.46) (49.54)
*** OTHER ***
______________________________________________________________________________________________________________
CCGTCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCCGGCCGAGAGTTGCGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGG REF 17 34161928 - 34162037
TGATTGTCCAAACGCAATTCT MATURE 17 34161949 - 34162078 mmu-miR-219 -
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................................GAGTTGCGTCTGGACGTCCCG............................ read_399273_0_1_1_1_0_0 OTHER 3 60.00 2 66.67 1 50.00 21
..............................................................GAGTTGCGTCTGGACGTCCCGt........................... read_107848_0_0_1_0_1_0 OTHER 2 40.00 1 33.33 1 50.00 t 21
---------- ---------- ----------
5 3 2
(60.00) (40.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 55 54 109 95.61%
OTHER 3 2 5 4.39%
---------- ---------- ----------
58 56 114
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