[BEGIN]

REFERENCE HAIRPIN
****************************************************************************************************************
ID                 : mmu-mir-212
DESCRIPTION        : mmu-mir-212 MI0000696 Mus musculus miR-212 stem-loop
CHROMOSOME         : 11
SPAN               : 74986890 - 74986980
LENGTH             : 91
SEQUENCE           : GGGCAGCGCGCCGGCACCTTGGCTCTAGACTGCTTACTGCCCGGGCCGCCTTCAGTAACAGTCTCCAGTCACGGCCACCGACGCCTGGCCC
OVERHANG THRESHOLD : 75%
****************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-212
ACCID      : MI0000696
PARENT     : mmu-mir-212
CHROMOSOME : 11
START      : 74986890
STOP       : 74986980
OFFSET     : 56..77
SEQUENCE   : TAACAGTCTCCAGTCACGGCCA
STRAND     : +
******************************



*** MATURE ***
___________________________________________________________________________________________
GGGCAGCGCGCCGGCACCTTGGCTCTAGACTGCTTACTGCCCGGGCCGCCTTCAGTAACAGTCTCCAGTCACGGCCACCGACGCCTGGCCC REF                  11                   74986890 - 74986980  
                                                       TAACAGTCTCCAGTCACGGCCA               MATURE               11                   74986946 - 74987057  mmu-miR-212          +                    
___________________________________________________________________________________________

                                                                                       -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........................................................AACAGTCTCCAGTCACGGCC................   read_372408_0_0_2_1_1_0       MATURE            4        25.00            2       100.00            2        14.29                        20   
........................................................AACAGTCTCCAGTCACGGCCAt..............   read_319647_0_0_0_2_0_1       MATURE            3        18.75            0         0.00            3        21.43            t           21   
........................................................AACAGTCTCCAGTCACGGC.................   read_377755_0_0_0_1_1_0       MATURE            2        12.50            0         0.00            2        14.29                        19   
........................................................AACAGTCTCCAGTCACGGCCA...............   read_291555_0_0_0_1_0_1       MATURE            2        12.50            0         0.00            2        14.29                        21   
........................................................AACAGTCTCCAGTCACGGCCAac.............    read_55510_0_0_0_1_0_0       MATURE            1         6.25            0         0.00            1         7.14           ac           21   
........................................................AACAGTCTCCAGTCACGGCCACt.............   read_174566_0_0_0_0_1_0       MATURE            1         6.25            0         0.00            1         7.14            t           22   
........................................................AACAGTCTCCAGTCACGGCCAat.............   read_389734_0_0_0_0_1_0       MATURE            1         6.25            0         0.00            1         7.14           at           21   
........................................................AACAGTCTCCAGTCACGGact...............    read_67908_0_0_0_0_1_0       MATURE            1         6.25            0         0.00            1         7.14          act           18   
........................................................AACAGTCTCCAGcCACGGCCAt..............   read_235750_0_0_0_0_0_1       MATURE            1         6.25            0         0.00            1         7.14            t         12C8   
                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                              16                         2                        14                                          
                                                                                                                                                                   (12.50)                   (87.50)                                       




*** OTHER ***
___________________________________________________________________________________________
GGGCAGCGCGCCGGCACCTTGGCTCTAGACTGCTTACTGCCCGGGCCGCCTTCAGTAACAGTCTCCAGTCACGGCCACCGACGCCTGGCCC REF                  11                   74986890 - 74986980  
                                                       TAACAGTCTCCAGTCACGGCCA               MATURE               11                   74986946 - 74987057  mmu-miR-212          +                    
___________________________________________________________________________________________

                                                                                       -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................CCTTGGCTCTAGACTGCTTACT......................................................   read_144139_1_0_0_0_0_2        OTHER            3        60.00            1       100.00            2        50.00                        22   
................CCTTGGCTCTAGACTGCTTACTG.....................................................   read_273572_0_0_0_0_1_0        OTHER            1        20.00            0         0.00            1        25.00                        23   
.................CTTGGCTCTAGACTGCTTACTG.....................................................   read_387627_0_0_0_0_0_1        OTHER            1        20.00            0         0.00            1        25.00                        22   
                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                               5                         1                         4                                          
                                                                                                                                                                   (20.00)                   (80.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               2              14              16          76.19%
          OTHER               1               4               5          23.81%
                     ----------      ----------      ----------                
                              3              18              21                



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