[BEGIN]

REFERENCE HAIRPIN
******************************************************************************************
ID                 : mmu-mir-200c
DESCRIPTION        : mmu-mir-200c MI0000694 Mus musculus miR-200c stem-loop
CHROMOSOME         : 6
SPAN               : 124668340 - 124668408
LENGTH             : 69
SEQUENCE           : CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG
OVERHANG THRESHOLD : 75%
******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-200c
ACCID      : MI0000694
PARENT     : mmu-mir-200c
CHROMOSOME : 6
START      : 124668340
STOP       : 124668408
OFFSET     : 45..67
SEQUENCE   : TAATACTGCCGGGTAATGATGGA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-200c*
ACCID      : MI0000694
PARENT     : mmu-mir-200c
CHROMOSOME : 6
START      : 124668340
STOP       : 124668408
OFFSET     : 5..26
SEQUENCE   : CGTCTTACCCAGCAGTGTTTGG
STRAND     : -
******************************



*** MATURE ***
_____________________________________________________________________
CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG REF                  6                    124668340 - 124668408 
                                            TAATACTGCCGGGTAATGATGGA   MATURE               6                    124668385 - 124668475 mmu-miR-200c         -                    
    CGTCTTACCCAGCAGTGTTTGG                                            MATURESTAR           6                    124668345 - 124668434 mmu-miR-200c*        -                    
_____________________________________________________________________

                                                                 -SEQ-                      -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................AATACTGCCGGGTAATGATGGA...   read_403830_14_15_6_2_4_6       MATURE           47        37.90           35        38.46           12        36.36                        22   
.............................................AATACTGCCGGGTAATGATGG....    read_332829_4_10_7_0_4_0       MATURE           25        20.16           21        23.08            4        12.12                        21   
.............................................AATACTGCCGGGTAATGATGGt...      read_18524_3_1_3_1_2_0       MATURE           10         8.06            7         7.69            3         9.09            t           21   
.............................................AATACTGCCGGGTAATGATG.....     read_103449_2_3_0_0_1_2       MATURE            8         6.45            5         5.49            3         9.09                        20   
.............................................AATACTGCCGGGTAATGATGt....     read_224120_1_0_0_1_0_3       MATURE            5         4.03            1         1.10            4        12.12            t           20   
.............................................AATACTGCCGGGTAATGATGGAt..     read_110752_1_0_2_0_0_0       MATURE            3         2.42            3         3.30            0         0.00            t           22   
.............................................AATACTGCCGGGTAATGATGGtt..     read_207804_0_0_1_0_0_2       MATURE            3         2.42            1         1.10            2         6.06           tt           21   
.............................................AATACTGCCGGGTAATGATa.....     read_279199_0_2_0_0_0_0       MATURE            2         1.61            2         2.20            0         0.00            a           19   
.............................................AATACTGCCGGGcAATGATGG....     read_391850_0_0_1_0_0_1       MATURE            2         1.61            1         1.10            1         3.03                      12C8   
.............................................AATACTGCCGGGTAATGATGta...     read_243967_2_0_0_0_0_0       MATURE            2         1.61            2         2.20            0         0.00           ta           20   
.............................................AATACTGCCGGGTAATGATGGAa..      read_26288_1_1_0_0_0_0       MATURE            2         1.61            2         2.20            0         0.00            a           22   
.............................................AATACTGCCGGGTAATcATGGA...     read_272622_0_0_0_0_1_0       MATURE            1         0.81            0         0.00            1         3.03                      16C5   
............................................TAATACTGCCGGGTAATGtaa.....      read_44607_0_0_1_0_0_0       MATURE            1         0.81            1         1.10            0         0.00          taa           18   
.............................................AATACTGCCGGGTAtTGATGG....     read_201163_1_0_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00                      14T6   
.............................................AATACTGCCGGGTAATGgTGG....      read_94524_1_0_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00                      17G3   
.............................................AATACTGCCGGGaAATGATGGA...     read_389789_0_0_1_0_0_0       MATURE            1         0.81            1         1.10            0         0.00                      12A9   
.............................................AATACTGCCGGGTgATGATGGA...     read_304323_0_1_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00                      13G8   
.............................................AATcCTGCCGGGTAATGATGG....     read_199875_0_0_1_0_0_0       MATURE            1         0.81            1         1.10            0         0.00                      3C17   
.............................................AATACTGCCGGGTAATGATGGAc..      read_68212_0_0_1_0_0_0       MATURE            1         0.81            1         1.10            0         0.00            c           22   
.............................................AATACTGCCGGGTAATGATGGg...     read_205142_1_0_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00            g           21   
.............................................AATACTGCCGaGTAATGATGG....      read_51404_1_0_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00                     10A10   
.............................................AATACTGCCGGGTcATGATGGA...     read_187672_0_0_0_0_0_1       MATURE            1         0.81            0         0.00            1         3.03                      13C8   
.............................................AATACTGCCGGGTAATGATGGttt.      read_57172_0_1_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00          ttt           21   
.............................................AATACTGCCGGGTAcTGATGG....     read_194676_0_0_0_0_1_0       MATURE            1         0.81            0         0.00            1         3.03                      14C6   
.............................................AATACTGCCGGGTAATGATGa....     read_370367_0_1_0_0_0_0       MATURE            1         0.81            1         1.10            0         0.00            a           20   
.............................................AATACTGCCGGGTAAaGATGGA...     read_151525_0_0_0_0_0_1       MATURE            1         0.81            0         0.00            1         3.03                      15A6   
                                                                                                                  ----------                ----------                ----------   
                                                                                                                         124                        91                        33                                          
                                                                                                                                               (73.39)                   (26.61)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              91              33             124         100.00%
                     ----------      ----------      ----------                
                             91              33             124                



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