[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************
ID : mmu-mir-200c
DESCRIPTION : mmu-mir-200c MI0000694 Mus musculus miR-200c stem-loop
CHROMOSOME : 6
SPAN : 124668340 - 124668408
LENGTH : 69
SEQUENCE : CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG
OVERHANG THRESHOLD : 75%
******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-200c
ACCID : MI0000694
PARENT : mmu-mir-200c
CHROMOSOME : 6
START : 124668340
STOP : 124668408
OFFSET : 45..67
SEQUENCE : TAATACTGCCGGGTAATGATGGA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-200c*
ACCID : MI0000694
PARENT : mmu-mir-200c
CHROMOSOME : 6
START : 124668340
STOP : 124668408
OFFSET : 5..26
SEQUENCE : CGTCTTACCCAGCAGTGTTTGG
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________
CCCTCGTCTTACCCAGCAGTGTTTGGGTGCTGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG REF 6 124668340 - 124668408
TAATACTGCCGGGTAATGATGGA MATURE 6 124668385 - 124668475 mmu-miR-200c -
CGTCTTACCCAGCAGTGTTTGG MATURESTAR 6 124668345 - 124668434 mmu-miR-200c* -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................AATACTGCCGGGTAATGATGGA... read_403830_14_15_6_2_4_6 MATURE 47 37.90 35 38.46 12 36.36 22
.............................................AATACTGCCGGGTAATGATGG.... read_332829_4_10_7_0_4_0 MATURE 25 20.16 21 23.08 4 12.12 21
.............................................AATACTGCCGGGTAATGATGGt... read_18524_3_1_3_1_2_0 MATURE 10 8.06 7 7.69 3 9.09 t 21
.............................................AATACTGCCGGGTAATGATG..... read_103449_2_3_0_0_1_2 MATURE 8 6.45 5 5.49 3 9.09 20
.............................................AATACTGCCGGGTAATGATGt.... read_224120_1_0_0_1_0_3 MATURE 5 4.03 1 1.10 4 12.12 t 20
.............................................AATACTGCCGGGTAATGATGGAt.. read_110752_1_0_2_0_0_0 MATURE 3 2.42 3 3.30 0 0.00 t 22
.............................................AATACTGCCGGGTAATGATGGtt.. read_207804_0_0_1_0_0_2 MATURE 3 2.42 1 1.10 2 6.06 tt 21
.............................................AATACTGCCGGGTAATGATa..... read_279199_0_2_0_0_0_0 MATURE 2 1.61 2 2.20 0 0.00 a 19
.............................................AATACTGCCGGGcAATGATGG.... read_391850_0_0_1_0_0_1 MATURE 2 1.61 1 1.10 1 3.03 12C8
.............................................AATACTGCCGGGTAATGATGta... read_243967_2_0_0_0_0_0 MATURE 2 1.61 2 2.20 0 0.00 ta 20
.............................................AATACTGCCGGGTAATGATGGAa.. read_26288_1_1_0_0_0_0 MATURE 2 1.61 2 2.20 0 0.00 a 22
.............................................AATACTGCCGGGTAATcATGGA... read_272622_0_0_0_0_1_0 MATURE 1 0.81 0 0.00 1 3.03 16C5
............................................TAATACTGCCGGGTAATGtaa..... read_44607_0_0_1_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 taa 18
.............................................AATACTGCCGGGTAtTGATGG.... read_201163_1_0_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 14T6
.............................................AATACTGCCGGGTAATGgTGG.... read_94524_1_0_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 17G3
.............................................AATACTGCCGGGaAATGATGGA... read_389789_0_0_1_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 12A9
.............................................AATACTGCCGGGTgATGATGGA... read_304323_0_1_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 13G8
.............................................AATcCTGCCGGGTAATGATGG.... read_199875_0_0_1_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 3C17
.............................................AATACTGCCGGGTAATGATGGAc.. read_68212_0_0_1_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 c 22
.............................................AATACTGCCGGGTAATGATGGg... read_205142_1_0_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 g 21
.............................................AATACTGCCGaGTAATGATGG.... read_51404_1_0_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 10A10
.............................................AATACTGCCGGGTcATGATGGA... read_187672_0_0_0_0_0_1 MATURE 1 0.81 0 0.00 1 3.03 13C8
.............................................AATACTGCCGGGTAATGATGGttt. read_57172_0_1_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 ttt 21
.............................................AATACTGCCGGGTAcTGATGG.... read_194676_0_0_0_0_1_0 MATURE 1 0.81 0 0.00 1 3.03 14C6
.............................................AATACTGCCGGGTAATGATGa.... read_370367_0_1_0_0_0_0 MATURE 1 0.81 1 1.10 0 0.00 a 20
.............................................AATACTGCCGGGTAAaGATGGA... read_151525_0_0_0_0_0_1 MATURE 1 0.81 0 0.00 1 3.03 15A6
---------- ---------- ----------
124 91 33
(73.39) (26.61)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 91 33 124 100.00%
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91 33 124
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