[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************
ID                 : mmu-mir-200b
DESCRIPTION        : mmu-mir-200b MI0000243 Mus musculus miR-200b stem-loop
CHROMOSOME         : 4
SPAN               : 155429790 - 155429859
LENGTH             : 70
SEQUENCE           : GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-200b
ACCID      : MI0000243
PARENT     : mmu-mir-200b
CHROMOSOME : 4
START      : 155429790
STOP       : 155429859
OFFSET     : 45..66
SEQUENCE   : TAATACTGCCTGGTAATGATGA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-200b*
ACCID      : MI0000243
PARENT     : mmu-mir-200b
CHROMOSOME : 4
START      : 155429790
STOP       : 155429859
OFFSET     : 9..30
SEQUENCE   : CATCTTACTGGGCAGCATTGGA
STRAND     : -
******************************



*** MATURE ***
______________________________________________________________________
GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC REF                  4                    155429790 - 155429859 
                                            TAATACTGCCTGGTAATGATGA     MATURE               4                    155429835 - 155429925 mmu-miR-200b         -                    
        CATCTTACTGGGCAGCATTGGA                                         MATURESTAR           4                    155429799 - 155429889 mmu-miR-200b*        -                    
______________________________________________________________________

                                                                  -SEQ-                         -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................AATACTGCCTGGTAATGATGA.....   read_255668_50_57_49_9_14_25       MATURE          204        35.73          156        36.03           48        34.78                        21   
.............................................AATACTGCCTGGTAATGATG......   read_234922_21_37_17_5_13_13       MATURE          106        18.56           75        17.32           31        22.46                        20   
.............................................AATACTGCCTGGTAATGATGt.....      read_49164_12_22_13_5_5_6       MATURE           63        11.03           47        10.85           16        11.59            t           20   
.............................................AATACTGCCTGGTAATGATGACt...      read_242110_8_24_11_1_2_5       MATURE           51         8.93           43         9.93            8         5.80            t           22   
.............................................AATACTGCCTGGTAATGAT.......       read_115625_6_13_7_0_3_7       MATURE           36         6.30           26         6.00           10         7.25                        19   
.............................................AATACTGCCTGGTAATGATGAC....        read_94261_7_12_8_1_1_3       MATURE           32         5.60           27         6.24            5         3.62                        22   
.............................................AATACTGCCTGGTAATGATGAt....         read_68840_5_3_2_0_1_0       MATURE           11         1.93           10         2.31            1         0.72            t           21   
.............................................AATACTGCCTGGTAATGATGAa....        read_289436_3_0_2_1_0_4       MATURE           10         1.75            5         1.15            5         3.62            a           21   
.............................................AATACTGCCTGGTAATGATa......        read_290561_1_0_3_0_0_0       MATURE            4         0.70            4         0.92            0         0.00            a           19   
.............................................AATACTGCCTGGTAATGATGACa...        read_227808_0_2_0_0_1_0       MATURE            3         0.53            2         0.46            1         0.72            a           22   
.............................................AATACTGCCTGGTAATGATGAg....          read_1310_2_0_1_0_0_0       MATURE            3         0.53            3         0.69            0         0.00            g           21   
.............................................AATACTGCCTGGTAATGATGACG...        read_390694_1_0_1_0_0_0       MATURE            2         0.35            2         0.46            0         0.00                        23   
..............................................ATACTGCCTGGTAATGATGACt...         read_28804_1_0_1_0_0_0       MATURE            2         0.35            2         0.46            0         0.00            t           21   
.............................................AATACTGCCTGGTAATGATGAga...        read_359263_0_0_0_0_2_0       MATURE            2         0.35            0         0.00            2         1.45           ga           21   
..............................................ATACTGCCTGGTAATGATGACtt..        read_323940_0_2_0_0_0_0       MATURE            2         0.35            2         0.46            0         0.00           tt           21   
.............................................AATACTGCCTGGTAATGATGtc....        read_256911_1_0_1_0_0_0       MATURE            2         0.35            2         0.46            0         0.00           tc           20   
.............................................AATACTGCCTGGTAATtATG......        read_343313_0_0_1_0_1_0       MATURE            2         0.35            1         0.23            1         0.72                      16T3   
.............................................AATACTGCCTGGTAATGATtt.....        read_271806_0_1_1_0_0_0       MATURE            2         0.35            2         0.46            0         0.00           tt           19   
.............................................AATACTGCCTGGTAATtATGA.....        read_238267_0_0_1_0_1_0       MATURE            2         0.35            1         0.23            1         0.72                      16T4   
.............................................AATACTGCCTGGTAATGATt......        read_192118_1_1_0_0_0_0       MATURE            2         0.35            2         0.46            0         0.00            t           19   
.............................................AATACTGCCTGGTAATtATGACa...        read_292019_1_1_0_0_0_0       MATURE            2         0.35            2         0.46            0         0.00            a         16T5   
.............................................AATACTGCCTGGTAATcATGACt...        read_309026_0_0_1_0_0_0       MATURE            1         0.18            1         0.23            0         0.00            t         16C5   
.............................................AATACTGaCTGGTAATGATGA.....        read_306949_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.72                      7A13   
.............................................AATACTGtCTGGTAATGATG......        read_226338_0_0_0_0_0_1       MATURE            1         0.18            0         0.00            1         0.72                      7T12   
.............................................tATACTGCCTGGTAATGAT.......         read_82556_0_0_1_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                        18   
.............................................AATACTGCCTGGTAATGATGAtt...        read_152404_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.72           tt           21   
.............................................AATACTGCCTGGTAATtATGAt....        read_392554_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.72            t         16T4   
.............................................AATACTGCCTGGTAATGATGtt....        read_249432_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00           tt           20   
.............................................AATACTGCCTGGTAcTGATG......        read_358940_1_0_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                      14C5   
.............................................AATACTGCCTGGTAATGATtc.....        read_212818_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.72           tc           19   
.............................................AATACTGCCTGGaAATGATGACG...        read_251570_0_0_1_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                     12A10   
.............................................AATACTGCCTGGTAATGATGttt...        read_243061_1_0_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00          ttt           20   
.............................................AATACTGCCTGGTAATG.........         read_23781_0_0_0_1_0_0       MATURE            1         0.18            0         0.00            1         0.72                        17   
.............................................AATACTGCCTGGTAcTGATGA.....        read_150393_0_0_0_0_0_1       MATURE            1         0.18            0         0.00            1         0.72                      14C6   
.............................................AATACTGCCTGGTAATGA........        read_283677_1_0_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                        18   
..............................................ATACTGCCTGGTAATGATGcct...         read_81052_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00          cct           19   
.............................................AATACTGCCTGtTAATGATGA.....         read_86640_0_0_1_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                      11T9   
.............................................AATACTGCCTGGTAATGATta.....        read_174721_0_0_0_0_0_1       MATURE            1         0.18            0         0.00            1         0.72           ta           19   
.............................................AATACTGCCTaGTAATGATGACt...        read_311029_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00            t        10A11   
.............................................AATAtTGCCTGGTAATGATG......        read_201984_0_0_0_0_1_0       MATURE            1         0.18            0         0.00            1         0.72                      4T15   
..............................................ATACTGCCTGGTAATGATGA.....         read_77561_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                        20   
.............................................AATACTGCCTGGTAATGAaa......        read_362072_1_0_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00           aa           18   
..............................................ATACTGCCTGGTAATGATGACa...        read_142460_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00            a           21   
.............................................AATACTGCCTGGTAATGATGACtt..        read_342449_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00           tt           22   
.............................................AATACTGCCTGGTAATGATGAag...        read_393275_1_0_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00           ag           21   
.............................................AATACTaCCTGGTAATGATGA.....        read_217700_1_0_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                      6A14   
.............................................AATAgTGCCTGGTAATGATGAC....         read_11906_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                      4G17   
..............................................ATACTGCCTGGTAATGATGAC....        read_344838_0_1_0_0_0_0       MATURE            1         0.18            1         0.23            0         0.00                        21   
.............................................AATACTGCCTGGTAATGAa.......        read_126778_0_0_1_0_0_0       MATURE            1         0.18            1         0.23            0         0.00            a           18   
                                                                                                                      ----------                ----------                ----------   
                                                                                                                             571                       433                       138                                          
                                                                                                                                                   (75.83)                   (24.17)                                       




*** MATURESTAR ***
______________________________________________________________________
GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC REF                  4                    155429790 - 155429859 
                                            TAATACTGCCTGGTAATGATGA     MATURE               4                    155429835 - 155429925 mmu-miR-200b         -                    
        CATCTTACTGGGCAGCATTGGA                                         MATURESTAR           4                    155429799 - 155429889 mmu-miR-200b*        -                    
______________________________________________________________________

                                                                  -SEQ-                       -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........ATCTTACTGGGCAGCATTGG..........................................       read_35173_2_1_1_0_1_0   MATURESTAR            5        45.45            4        40.00            1       100.00                        20   
.........ATCTTACTGGGCAGCATTGGA.........................................        read_6302_2_2_0_0_0_0   MATURESTAR            4        36.36            4        40.00            0         0.00                        21   
.........ATCTTACTGGGCAGtATTGG..........................................      read_216750_1_0_0_0_0_0   MATURESTAR            1         9.09            1        10.00            0         0.00                      14T5   
.........ATCTTACTGGGCAGCATTGGt.........................................      read_288763_1_0_0_0_0_0   MATURESTAR            1         9.09            1        10.00            0         0.00            t           20   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                            11                        10                         1                                          
                                                                                                                                                 (90.91)                    (9.09)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             433             138             571          98.11%
     MATURESTAR              10               1              11           1.89%
                     ----------      ----------      ----------                
                            443             139             582                



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