[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************
ID : mmu-mir-200b
DESCRIPTION : mmu-mir-200b MI0000243 Mus musculus miR-200b stem-loop
CHROMOSOME : 4
SPAN : 155429790 - 155429859
LENGTH : 70
SEQUENCE : GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC
OVERHANG THRESHOLD : 75%
*******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-200b
ACCID : MI0000243
PARENT : mmu-mir-200b
CHROMOSOME : 4
START : 155429790
STOP : 155429859
OFFSET : 45..66
SEQUENCE : TAATACTGCCTGGTAATGATGA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-200b*
ACCID : MI0000243
PARENT : mmu-mir-200b
CHROMOSOME : 4
START : 155429790
STOP : 155429859
OFFSET : 9..30
SEQUENCE : CATCTTACTGGGCAGCATTGGA
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________
GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC REF 4 155429790 - 155429859
TAATACTGCCTGGTAATGATGA MATURE 4 155429835 - 155429925 mmu-miR-200b -
CATCTTACTGGGCAGCATTGGA MATURESTAR 4 155429799 - 155429889 mmu-miR-200b* -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................AATACTGCCTGGTAATGATGA..... read_255668_50_57_49_9_14_25 MATURE 204 35.73 156 36.03 48 34.78 21
.............................................AATACTGCCTGGTAATGATG...... read_234922_21_37_17_5_13_13 MATURE 106 18.56 75 17.32 31 22.46 20
.............................................AATACTGCCTGGTAATGATGt..... read_49164_12_22_13_5_5_6 MATURE 63 11.03 47 10.85 16 11.59 t 20
.............................................AATACTGCCTGGTAATGATGACt... read_242110_8_24_11_1_2_5 MATURE 51 8.93 43 9.93 8 5.80 t 22
.............................................AATACTGCCTGGTAATGAT....... read_115625_6_13_7_0_3_7 MATURE 36 6.30 26 6.00 10 7.25 19
.............................................AATACTGCCTGGTAATGATGAC.... read_94261_7_12_8_1_1_3 MATURE 32 5.60 27 6.24 5 3.62 22
.............................................AATACTGCCTGGTAATGATGAt.... read_68840_5_3_2_0_1_0 MATURE 11 1.93 10 2.31 1 0.72 t 21
.............................................AATACTGCCTGGTAATGATGAa.... read_289436_3_0_2_1_0_4 MATURE 10 1.75 5 1.15 5 3.62 a 21
.............................................AATACTGCCTGGTAATGATa...... read_290561_1_0_3_0_0_0 MATURE 4 0.70 4 0.92 0 0.00 a 19
.............................................AATACTGCCTGGTAATGATGACa... read_227808_0_2_0_0_1_0 MATURE 3 0.53 2 0.46 1 0.72 a 22
.............................................AATACTGCCTGGTAATGATGAg.... read_1310_2_0_1_0_0_0 MATURE 3 0.53 3 0.69 0 0.00 g 21
.............................................AATACTGCCTGGTAATGATGACG... read_390694_1_0_1_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 23
..............................................ATACTGCCTGGTAATGATGACt... read_28804_1_0_1_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 t 21
.............................................AATACTGCCTGGTAATGATGAga... read_359263_0_0_0_0_2_0 MATURE 2 0.35 0 0.00 2 1.45 ga 21
..............................................ATACTGCCTGGTAATGATGACtt.. read_323940_0_2_0_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 tt 21
.............................................AATACTGCCTGGTAATGATGtc.... read_256911_1_0_1_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 tc 20
.............................................AATACTGCCTGGTAATtATG...... read_343313_0_0_1_0_1_0 MATURE 2 0.35 1 0.23 1 0.72 16T3
.............................................AATACTGCCTGGTAATGATtt..... read_271806_0_1_1_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 tt 19
.............................................AATACTGCCTGGTAATtATGA..... read_238267_0_0_1_0_1_0 MATURE 2 0.35 1 0.23 1 0.72 16T4
.............................................AATACTGCCTGGTAATGATt...... read_192118_1_1_0_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 t 19
.............................................AATACTGCCTGGTAATtATGACa... read_292019_1_1_0_0_0_0 MATURE 2 0.35 2 0.46 0 0.00 a 16T5
.............................................AATACTGCCTGGTAATcATGACt... read_309026_0_0_1_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 t 16C5
.............................................AATACTGaCTGGTAATGATGA..... read_306949_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.72 7A13
.............................................AATACTGtCTGGTAATGATG...... read_226338_0_0_0_0_0_1 MATURE 1 0.18 0 0.00 1 0.72 7T12
.............................................tATACTGCCTGGTAATGAT....... read_82556_0_0_1_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 18
.............................................AATACTGCCTGGTAATGATGAtt... read_152404_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.72 tt 21
.............................................AATACTGCCTGGTAATtATGAt.... read_392554_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.72 t 16T4
.............................................AATACTGCCTGGTAATGATGtt.... read_249432_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 tt 20
.............................................AATACTGCCTGGTAcTGATG...... read_358940_1_0_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 14C5
.............................................AATACTGCCTGGTAATGATtc..... read_212818_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.72 tc 19
.............................................AATACTGCCTGGaAATGATGACG... read_251570_0_0_1_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 12A10
.............................................AATACTGCCTGGTAATGATGttt... read_243061_1_0_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 ttt 20
.............................................AATACTGCCTGGTAATG......... read_23781_0_0_0_1_0_0 MATURE 1 0.18 0 0.00 1 0.72 17
.............................................AATACTGCCTGGTAcTGATGA..... read_150393_0_0_0_0_0_1 MATURE 1 0.18 0 0.00 1 0.72 14C6
.............................................AATACTGCCTGGTAATGA........ read_283677_1_0_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 18
..............................................ATACTGCCTGGTAATGATGcct... read_81052_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 cct 19
.............................................AATACTGCCTGtTAATGATGA..... read_86640_0_0_1_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 11T9
.............................................AATACTGCCTGGTAATGATta..... read_174721_0_0_0_0_0_1 MATURE 1 0.18 0 0.00 1 0.72 ta 19
.............................................AATACTGCCTaGTAATGATGACt... read_311029_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 t 10A11
.............................................AATAtTGCCTGGTAATGATG...... read_201984_0_0_0_0_1_0 MATURE 1 0.18 0 0.00 1 0.72 4T15
..............................................ATACTGCCTGGTAATGATGA..... read_77561_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 20
.............................................AATACTGCCTGGTAATGAaa...... read_362072_1_0_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 aa 18
..............................................ATACTGCCTGGTAATGATGACa... read_142460_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 a 21
.............................................AATACTGCCTGGTAATGATGACtt.. read_342449_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 tt 22
.............................................AATACTGCCTGGTAATGATGAag... read_393275_1_0_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 ag 21
.............................................AATACTaCCTGGTAATGATGA..... read_217700_1_0_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 6A14
.............................................AATAgTGCCTGGTAATGATGAC.... read_11906_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 4G17
..............................................ATACTGCCTGGTAATGATGAC.... read_344838_0_1_0_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 21
.............................................AATACTGCCTGGTAATGAa....... read_126778_0_0_1_0_0_0 MATURE 1 0.18 1 0.23 0 0.00 a 18
---------- ---------- ----------
571 433 138
(75.83) (24.17)
*** MATURESTAR ***
______________________________________________________________________
GCCGTGGCCATCTTACTGGGCAGCATTGGATAGTGTCTGATCTCTAATACTGCCTGGTAATGATGACGGC REF 4 155429790 - 155429859
TAATACTGCCTGGTAATGATGA MATURE 4 155429835 - 155429925 mmu-miR-200b -
CATCTTACTGGGCAGCATTGGA MATURESTAR 4 155429799 - 155429889 mmu-miR-200b* -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........ATCTTACTGGGCAGCATTGG.......................................... read_35173_2_1_1_0_1_0 MATURESTAR 5 45.45 4 40.00 1 100.00 20
.........ATCTTACTGGGCAGCATTGGA......................................... read_6302_2_2_0_0_0_0 MATURESTAR 4 36.36 4 40.00 0 0.00 21
.........ATCTTACTGGGCAGtATTGG.......................................... read_216750_1_0_0_0_0_0 MATURESTAR 1 9.09 1 10.00 0 0.00 14T5
.........ATCTTACTGGGCAGCATTGGt......................................... read_288763_1_0_0_0_0_0 MATURESTAR 1 9.09 1 10.00 0 0.00 t 20
---------- ---------- ----------
11 10 1
(90.91) (9.09)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 433 138 571 98.11%
MATURESTAR 10 1 11 1.89%
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443 139 582
[END]