[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************************************
ID                 : mmu-mir-200a
DESCRIPTION        : mmu-mir-200a MI0000554 Mus musculus miR-200a stem-loop
CHROMOSOME         : 4
SPAN               : 155429005 - 155429094
LENGTH             : 90
SEQUENCE           : CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC
OVERHANG THRESHOLD : 75%
***************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-200a
ACCID      : MI0000554
PARENT     : mmu-mir-200a
CHROMOSOME : 4
START      : 155429005
STOP       : 155429094
OFFSET     : 54..75
SEQUENCE   : TAACACTGTCTGGTAACGATGT
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-200a*
ACCID      : MI0000554
PARENT     : mmu-mir-200a
CHROMOSOME : 4
START      : 155429005
STOP       : 155429094
OFFSET     : 16..37
SEQUENCE   : CATCTTACCGGACAGTGCTGGA
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF                  4                    155429005 - 155429094 
                                                     TAACACTGTCTGGTAACGATGT                MATURE               4                    155429059 - 155429169 mmu-miR-200a         -                    
               CATCTTACCGGACAGTGCTGGA                                                      MATURESTAR           4                    155429021 - 155429131 mmu-miR-200a*        -                    
__________________________________________________________________________________________

                                                                                      -SEQ-                           -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......................................................AACACTGTCTGGTAACGATGT................   read_57204_94_128_108_21_31_38       MATURE          420        51.66          330        52.72           90        48.13                        21   
......................................................AACACTGTCTGGTAACGATGTT...............     read_21884_50_65_63_12_16_21       MATURE          227        27.92          178        28.43           49        26.20                        22   
......................................................AACACTGTCTGGTAACGATG.................         read_62130_8_21_11_5_5_2       MATURE           52         6.40           40         6.39           12         6.42                        20   
......................................................AACACTGTCTGGTAACGAT..................          read_136255_2_2_2_2_4_2       MATURE           14         1.72            6         0.96            8         4.28                        19   
......................................................AACACTGTCTGGTAACGATGTTa..............           read_67072_1_5_5_0_1_0       MATURE           12         1.48           11         1.76            1         0.53            a           22   
......................................................AACACTGTCTGGTAACGATGTTt..............           read_83839_1_2_6_0_0_1       MATURE           10         1.23            9         1.44            1         0.53            t           22   
......................................................AACACTGTCTGGTAACGATGa................          read_317902_2_1_1_1_1_2       MATURE            8         0.98            4         0.64            4         2.14            a           20   
......................................................AACACTGTCTGGTAACGATa.................          read_261693_1_3_0_0_0_0       MATURE            4         0.49            4         0.64            0         0.00            a           19   
.......................................................ACACTGTCTGGTAACGATGTT...............           read_69207_1_0_0_2_0_1       MATURE            4         0.49            1         0.16            3         1.60                        21   
......................................................AACACTGTCTGGTAACtATGT................          read_175593_0_1_1_0_0_1       MATURE            3         0.37            2         0.32            1         0.53                      16T4   
......................................................AACACTGTCTGGTAACGA...................          read_187390_2_0_0_0_1_0       MATURE            3         0.37            2         0.32            1         0.53                        18   
......................................................AACACTGTCTGGTcACGATGT................          read_343875_0_1_1_0_0_0       MATURE            2         0.25            2         0.32            0         0.00                      13C7   
......................................................AACACTGTCTGGTAACGATtt................           read_43941_0_0_2_0_0_0       MATURE            2         0.25            2         0.32            0         0.00           tt           19   
......................................................AACACTGTCTGGTAAaGATGTT...............          read_181045_0_0_1_0_1_0       MATURE            2         0.25            1         0.16            1         0.53                      15A6   
......................................................AACACTGTCTGGTAACaATGTT...............          read_106862_0_0_2_0_0_0       MATURE            2         0.25            2         0.32            0         0.00                      16A5   
......................................................AACACTGTCTGGTAgCGATGTT...............           read_59072_2_0_0_0_0_0       MATURE            2         0.25            2         0.32            0         0.00                      14G7   
......................................................AACACTGTCTGGTAtCGATGT................          read_357910_2_0_0_0_0_0       MATURE            2         0.25            2         0.32            0         0.00                      14T6   
......................................................AACACTGTCTGGTAACGATGTa...............            read_4728_1_0_1_0_0_0       MATURE            2         0.25            2         0.32            0         0.00            a           21   
......................................................AACACTGTCTGGTAtCGATGTT...............           read_86067_2_0_0_0_0_0       MATURE            2         0.25            2         0.32            0         0.00                      14T7   
......................................................AACACTGTCTGGTAACGtTGT................          read_276959_0_0_1_0_1_0       MATURE            2         0.25            1         0.16            1         0.53                      17T3   
..........................................................CTGTCTGGTAACGATGT................          read_392150_0_0_0_1_0_1       MATURE            2         0.25            0         0.00            2         1.07                        17   
......................................................AACACTGTCTGGTAACG....................           read_66413_0_0_0_0_1_1       MATURE            2         0.25            0         0.00            2         1.07                        17   
......................................................AACACTGTtTGGTAACGATGT................           read_34812_1_0_0_1_0_0       MATURE            2         0.25            1         0.16            1         0.53                      8T12   
......................................................AACACTGTCTGGTAACGcTG.................          read_352600_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      17C2   
......................................................AACACTGTCTGGTAACGATtTT...............          read_351227_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.53                      19T2   
......................................................AACACTGaCTGGTAACGATGTT...............          read_207159_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      7A14   
......................................................AACtCTGTCTGGTAACGATGT................          read_192395_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.53                      3T17   
......................................................AACACTGTCTGGTAACGATGc................           read_74284_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00            c           20   
......................................................AACACTGTCTGGTAACGATGTTaga............          read_270527_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.53          aga           22   
......................................................AACACTGTCTGGTAACGAat.................          read_234006_0_0_0_0_0_1       MATURE            1         0.12            0         0.00            1         0.53           at           18   
......................................................AACACTGTaTGGTAACGATGT................           read_77588_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      8A12   
......................................................AACACTGTCTGGTAgCGATGT................          read_232075_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      14G6   
......................................................AACACTGTCTGGTAACGcTGTa...............          read_213406_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00            a         17C3   
......................................................AACACTtTCTGGTAACGATGTT...............          read_131040_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      6T15   
......................................................AACACTtTCTGGTAACGATGTTa..............          read_305343_1_0_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00            a         6T15   
......................................................gACACTGTCTGGTAACGATGTT...............           read_74013_1_0_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                        21   
......................................................AACAtTGTCTGGTAACGATGT................           read_75026_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.53                      4T16   
......................................................AACACTGTCTGGaAACGATGT................          read_325556_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      12A8   
......................................................AACACTGTCTGGTAACGAcGTT...............           read_84429_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      18C3   
......................................................AAaACTGTCTGGTAACGATGT................          read_155674_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      2A18   
......................................................AACACTGcCTGGTAACGATGT................           read_36035_0_0_0_0_0_1       MATURE            1         0.12            0         0.00            1         0.53                      7C13   
......................................................AACACTaTCTGGTAACGATGTT...............          read_211508_1_0_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      6A15   
......................................................AACAaTGTCTGGTAACGATGT................          read_377018_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      4A16   
......................................................AACACTGTCTGGTAACGgTGTT...............          read_180348_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      17G4   
......................................................AACAaTGTCTGGTAACGATGTT...............           read_72493_1_0_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      4A17   
.........................................................ACTGTCTGGTAACGATGT................          read_123675_1_0_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                        18   
......................................................AACACTGTCTGGTAACGATcTT...............          read_305132_0_0_0_0_1_0       MATURE            1         0.12            0         0.00            1         0.53                      19C2   
......................................................AACACTGTCTGGTAACGtTGTT...............          read_125295_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.53                      17T4   
......................................................AACACTGTCTGGTAACGATtTTa..............          read_390083_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00            a         19T2   
......................................................AACACTGTCTGGTAACtATGTT...............          read_111407_0_0_1_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      16T5   
......................................................AACACTGTCTGGTgACGATGT................          read_229828_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      13G7   
......................................................AACACTGTCTGGTAAaGATGTTa..............           read_85776_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.53            a         15A6   
......................................................cACACTGTCTGGTAACGATtt................          read_118837_1_0_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00           tt           18   
......................................................AACACTGTCTGGTAACGcTGTT...............          read_392305_0_1_0_0_0_0       MATURE            1         0.12            1         0.16            0         0.00                      17C4   
......................................................cACACTGTCTGGTAACGATGTT...............          read_123128_0_0_0_1_0_0       MATURE            1         0.12            0         0.00            1         0.53                        21   
                                                                                                                                            ----------                ----------                ----------   
                                                                                                                                                   813                       626                       187                                          
                                                                                                                                                                         (77.00)                   (23.00)                                       




*** MATURESTAR ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF                  4                    155429005 - 155429094 
                                                     TAACACTGTCTGGTAACGATGT                MATURE               4                    155429059 - 155429169 mmu-miR-200a         -                    
               CATCTTACCGGACAGTGCTGGA                                                      MATURESTAR           4                    155429021 - 155429131 mmu-miR-200a*        -                    
__________________________________________________________________________________________

                                                                                      -SEQ-                    -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................ATCTTACCGGACAGTGCTGGAat....................................................   read_223125_0_1_0_0_0_0   MATURESTAR            1        50.00            1        50.00            0            0           at           21   
................ATCTTACCGGACAGTGCTGGAa.....................................................    read_43226_0_1_0_0_0_0   MATURESTAR            1        50.00            1        50.00            0            0            a           21   
                                                                                                                                     ----------                ----------                ----------   
                                                                                                                                              2                         2                         0                                          
                                                                                                                                                                 (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             626             187             813          99.75%
     MATURESTAR               2               0               2           0.25%
                     ----------      ----------      ----------                
                            628             187             815                



[END]
