[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************
ID : mmu-mir-200a
DESCRIPTION : mmu-mir-200a MI0000554 Mus musculus miR-200a stem-loop
CHROMOSOME : 4
SPAN : 155429005 - 155429094
LENGTH : 90
SEQUENCE : CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC
OVERHANG THRESHOLD : 75%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-200a
ACCID : MI0000554
PARENT : mmu-mir-200a
CHROMOSOME : 4
START : 155429005
STOP : 155429094
OFFSET : 54..75
SEQUENCE : TAACACTGTCTGGTAACGATGT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-200a*
ACCID : MI0000554
PARENT : mmu-mir-200a
CHROMOSOME : 4
START : 155429005
STOP : 155429094
OFFSET : 16..37
SEQUENCE : CATCTTACCGGACAGTGCTGGA
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF 4 155429005 - 155429094
TAACACTGTCTGGTAACGATGT MATURE 4 155429059 - 155429169 mmu-miR-200a -
CATCTTACCGGACAGTGCTGGA MATURESTAR 4 155429021 - 155429131 mmu-miR-200a* -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................................................AACACTGTCTGGTAACGATGT................ read_57204_94_128_108_21_31_38 MATURE 420 51.66 330 52.72 90 48.13 21
......................................................AACACTGTCTGGTAACGATGTT............... read_21884_50_65_63_12_16_21 MATURE 227 27.92 178 28.43 49 26.20 22
......................................................AACACTGTCTGGTAACGATG................. read_62130_8_21_11_5_5_2 MATURE 52 6.40 40 6.39 12 6.42 20
......................................................AACACTGTCTGGTAACGAT.................. read_136255_2_2_2_2_4_2 MATURE 14 1.72 6 0.96 8 4.28 19
......................................................AACACTGTCTGGTAACGATGTTa.............. read_67072_1_5_5_0_1_0 MATURE 12 1.48 11 1.76 1 0.53 a 22
......................................................AACACTGTCTGGTAACGATGTTt.............. read_83839_1_2_6_0_0_1 MATURE 10 1.23 9 1.44 1 0.53 t 22
......................................................AACACTGTCTGGTAACGATGa................ read_317902_2_1_1_1_1_2 MATURE 8 0.98 4 0.64 4 2.14 a 20
......................................................AACACTGTCTGGTAACGATa................. read_261693_1_3_0_0_0_0 MATURE 4 0.49 4 0.64 0 0.00 a 19
.......................................................ACACTGTCTGGTAACGATGTT............... read_69207_1_0_0_2_0_1 MATURE 4 0.49 1 0.16 3 1.60 21
......................................................AACACTGTCTGGTAACtATGT................ read_175593_0_1_1_0_0_1 MATURE 3 0.37 2 0.32 1 0.53 16T4
......................................................AACACTGTCTGGTAACGA................... read_187390_2_0_0_0_1_0 MATURE 3 0.37 2 0.32 1 0.53 18
......................................................AACACTGTCTGGTcACGATGT................ read_343875_0_1_1_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 13C7
......................................................AACACTGTCTGGTAACGATtt................ read_43941_0_0_2_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 tt 19
......................................................AACACTGTCTGGTAAaGATGTT............... read_181045_0_0_1_0_1_0 MATURE 2 0.25 1 0.16 1 0.53 15A6
......................................................AACACTGTCTGGTAACaATGTT............... read_106862_0_0_2_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 16A5
......................................................AACACTGTCTGGTAgCGATGTT............... read_59072_2_0_0_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 14G7
......................................................AACACTGTCTGGTAtCGATGT................ read_357910_2_0_0_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 14T6
......................................................AACACTGTCTGGTAACGATGTa............... read_4728_1_0_1_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 a 21
......................................................AACACTGTCTGGTAtCGATGTT............... read_86067_2_0_0_0_0_0 MATURE 2 0.25 2 0.32 0 0.00 14T7
......................................................AACACTGTCTGGTAACGtTGT................ read_276959_0_0_1_0_1_0 MATURE 2 0.25 1 0.16 1 0.53 17T3
..........................................................CTGTCTGGTAACGATGT................ read_392150_0_0_0_1_0_1 MATURE 2 0.25 0 0.00 2 1.07 17
......................................................AACACTGTCTGGTAACG.................... read_66413_0_0_0_0_1_1 MATURE 2 0.25 0 0.00 2 1.07 17
......................................................AACACTGTtTGGTAACGATGT................ read_34812_1_0_0_1_0_0 MATURE 2 0.25 1 0.16 1 0.53 8T12
......................................................AACACTGTCTGGTAACGcTG................. read_352600_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 17C2
......................................................AACACTGTCTGGTAACGATtTT............... read_351227_0_0_0_1_0_0 MATURE 1 0.12 0 0.00 1 0.53 19T2
......................................................AACACTGaCTGGTAACGATGTT............... read_207159_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 7A14
......................................................AACtCTGTCTGGTAACGATGT................ read_192395_0_0_0_0_1_0 MATURE 1 0.12 0 0.00 1 0.53 3T17
......................................................AACACTGTCTGGTAACGATGc................ read_74284_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 c 20
......................................................AACACTGTCTGGTAACGATGTTaga............ read_270527_0_0_0_0_1_0 MATURE 1 0.12 0 0.00 1 0.53 aga 22
......................................................AACACTGTCTGGTAACGAat................. read_234006_0_0_0_0_0_1 MATURE 1 0.12 0 0.00 1 0.53 at 18
......................................................AACACTGTaTGGTAACGATGT................ read_77588_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 8A12
......................................................AACACTGTCTGGTAgCGATGT................ read_232075_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 14G6
......................................................AACACTGTCTGGTAACGcTGTa............... read_213406_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 a 17C3
......................................................AACACTtTCTGGTAACGATGTT............... read_131040_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 6T15
......................................................AACACTtTCTGGTAACGATGTTa.............. read_305343_1_0_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 a 6T15
......................................................gACACTGTCTGGTAACGATGTT............... read_74013_1_0_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 21
......................................................AACAtTGTCTGGTAACGATGT................ read_75026_0_0_0_0_1_0 MATURE 1 0.12 0 0.00 1 0.53 4T16
......................................................AACACTGTCTGGaAACGATGT................ read_325556_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 12A8
......................................................AACACTGTCTGGTAACGAcGTT............... read_84429_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 18C3
......................................................AAaACTGTCTGGTAACGATGT................ read_155674_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 2A18
......................................................AACACTGcCTGGTAACGATGT................ read_36035_0_0_0_0_0_1 MATURE 1 0.12 0 0.00 1 0.53 7C13
......................................................AACACTaTCTGGTAACGATGTT............... read_211508_1_0_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 6A15
......................................................AACAaTGTCTGGTAACGATGT................ read_377018_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 4A16
......................................................AACACTGTCTGGTAACGgTGTT............... read_180348_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 17G4
......................................................AACAaTGTCTGGTAACGATGTT............... read_72493_1_0_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 4A17
.........................................................ACTGTCTGGTAACGATGT................ read_123675_1_0_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 18
......................................................AACACTGTCTGGTAACGATcTT............... read_305132_0_0_0_0_1_0 MATURE 1 0.12 0 0.00 1 0.53 19C2
......................................................AACACTGTCTGGTAACGtTGTT............... read_125295_0_0_0_1_0_0 MATURE 1 0.12 0 0.00 1 0.53 17T4
......................................................AACACTGTCTGGTAACGATtTTa.............. read_390083_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 a 19T2
......................................................AACACTGTCTGGTAACtATGTT............... read_111407_0_0_1_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 16T5
......................................................AACACTGTCTGGTgACGATGT................ read_229828_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 13G7
......................................................AACACTGTCTGGTAAaGATGTTa.............. read_85776_0_0_0_1_0_0 MATURE 1 0.12 0 0.00 1 0.53 a 15A6
......................................................cACACTGTCTGGTAACGATtt................ read_118837_1_0_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 tt 18
......................................................AACACTGTCTGGTAACGcTGTT............... read_392305_0_1_0_0_0_0 MATURE 1 0.12 1 0.16 0 0.00 17C4
......................................................cACACTGTCTGGTAACGATGTT............... read_123128_0_0_0_1_0_0 MATURE 1 0.12 0 0.00 1 0.53 21
---------- ---------- ----------
813 626 187
(77.00) (23.00)
*** MATURESTAR ***
__________________________________________________________________________________________
CTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAC REF 4 155429005 - 155429094
TAACACTGTCTGGTAACGATGT MATURE 4 155429059 - 155429169 mmu-miR-200a -
CATCTTACCGGACAGTGCTGGA MATURESTAR 4 155429021 - 155429131 mmu-miR-200a* -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................ATCTTACCGGACAGTGCTGGAat.................................................... read_223125_0_1_0_0_0_0 MATURESTAR 1 50.00 1 50.00 0 0 at 21
................ATCTTACCGGACAGTGCTGGAa..................................................... read_43226_0_1_0_0_0_0 MATURESTAR 1 50.00 1 50.00 0 0 a 21
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 626 187 813 99.75%
MATURESTAR 2 0 2 0.25%
---------- ---------- ----------
628 187 815
[END]